Ted Cohen
Research & Publications
Biography
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Extensive Research Description
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Evaluating health and economic effects of targeted strategies in TB/HIV epidemics
NIH R01 AI112438-01 Multiple PI (Ted Cohen lead PI, Josh Salomon co-PI) In this multiple-PI application, we propose to develop and analyze mathematical models of tuberculosis (TB) and HIV epidemics to examine whether targeted use of preventive therapy for latent TB infection (TLTBI) and active TB case-finding may prove more effective, and more cost-effective, than non-targeted use of interventions. We propose to use this model to evaluate the comparative effectiveness and efficiency of alternative choices in the design and implementation of targeted strategies. Toward this goal our project has three specific aims: (1) To develop a detailed simulation model of TB/HIV co-epidemics and calibrate the model to 9 high burden countries in sub-Saharan Africa; (2) To use this model to identify strategies for effective and cost-effective use of targeted screening for active tuberculosis; and (3) To use this model to identify strategies for effective and cost-effective use of targeted TLTBI. |
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2014-2019 |
MIDAS Center for Communicable Disease Dynamics NIH/NIGMS U54 GM088558 Co-Investigator The goal of this project is to advance the quantitative study of communicable diseases through training/education, transdisciplinary research, and public health policy. The center develops statistical and novel modeling methods, trains mathematical modelers, performs outreach, and develops software for the analysis of communicable disease data. |
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2013-2015 |
TB Modeling and Analysis Consortium Bill and Melinda Gates Foundation Co-Investigator The overall aim of TB MAC is to improve global TB control by coordinating and promoting mathematical modeling and other quantitative research relevant to support evidence-based policy making and implementation. Its objectives were to (1) Review high-priority research questions concerning TB control that require mathematical modeling and other quantitative research, (2) Review data, information, and expertise to achieve consensus on current knowledge and knowledge gaps, methodological standards, and current best practice for TB control decision making, and (3) Disseminate information and tools to key stakeholders, including TB control programmers and donors |
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2014-2018 |
Mathematical models to improve drug dosing for limiting persistence in M. tuberculosis Gates Foundation Principal Investigator New modeling approaches that integrate readily available data on both pharmacokinetics and bacterial killing in vivo and in vitro, would be an attractive tool to inform the development of new anti-tuberculosis regimens. We hypothesize that more effective treatment strategies can be identified by considering chemical reaction kinetics in bacterial cells. Chemical parameters can be easily measured, such that predictions on antibacterial activity could be made very early in development. This would not only benefit TB therapy, but likely the development of antibiotics in general. Here, we propose to use mathematical models describing both reaction kinetics and growth and death of bacterial populations to achieve the following two aims: 1) Predict optimal treatment regimens (duration, dose size and frequency) for clearing persisting mycobacteria and 2) Develop a mechanistic understanding of dose-response curves |
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2014-2015 |
Improving estimates of the incidence of pediatric tuberculosis TB Alliance Principal Investigator The objective of this work is to develop a method to utilize multiple sources of available data to improve current estimates of the incidence of pediatric TB at country, regional, and global levels. |
Coauthors
Research Interests
Drug Resistance, Microbial; Epidemiology; Europe, Eastern; Models, Biological; Public Health; South America; Tuberculosis; HIV Infections; Molecular Epidemiology; Africa South of the Sahara
Public Health Interests
Antimicrobial Resistance; Disease Transmission; Emerging Infectious Diseases; GIS/Disease Mapping; Global Health; Health Care Management; HIV/AIDS; Infectious Diseases; Modeling; Tuberculosis; COVID-19
Selected Publications
- Global, regional, and national estimates of tuberculosis incidence and case detection among incarcerated individuals from 2000 to 2019: a systematic analysisMartinez L, Warren J, Harries A, Croda J, Espinal M, Olarte R, Avedillo P, Lienhardt C, Bhatia V, Liu Q, Chakaya J, Denholm J, Lin Y, Kawatsu L, Zhu L, Horsburgh C, Cohen T, Andrews J. Global, regional, and national estimates of tuberculosis incidence and case detection among incarcerated individuals from 2000 to 2019: a systematic analysis The Lancet Public Health 2023, 8: e511-e519. PMID: 37393090, DOI: 10.1016/s2468-2667(23)00097-x.
- Changes in population immunity against infection and severe disease from SARS-CoV-2 Omicron variants in the United States between December 2021 and November 2022.Klaassen F, Chitwood M, Cohen T, Pitzer V, Russi M, Swartwood N, Salomon J, Menzies N. Changes in population immunity against infection and severe disease from SARS-CoV-2 Omicron variants in the United States between December 2021 and November 2022. Clinical Infectious Diseases 2023 PMID: 37074868, DOI: 10.1093/cid/ciad210.
- Transmission modeling to infer tuberculosis incidence prevalence and mortality in settings with generalized HIV epidemicsDodd P, Shaweno D, Ku C, Glaziou P, Pretorius C, Hayes R, MacPherson P, Cohen T, Ayles H. Transmission modeling to infer tuberculosis incidence prevalence and mortality in settings with generalized HIV epidemics Nature Communications 2023, 14: 1639. PMID: 36964130, PMCID: PMC10037365, DOI: 10.1038/s41467-023-37314-1.
- Spatial modeling of Mycobacterium tuberculosis transmission with dyadic genetic relatedness dataWarren J, Chitwood M, Sobkowiak B, Colijn C, Cohen T. Spatial modeling of Mycobacterium tuberculosis transmission with dyadic genetic relatedness data Biometrics 2023 PMID: 36745619, DOI: 10.1111/biom.13836.
- Quantifying Mycobacterium tuberculosis Transmission Dynamics Across Global Settings: A Systematic Analysis.Smith J, Cohen T, Dowdy D, Shrestha S, Gandhi NR, Hill AN. Quantifying Mycobacterium tuberculosis Transmission Dynamics Across Global Settings: A Systematic Analysis. American Journal Of Epidemiology 2022, 192: 133-145. PMID: 36227246, PMCID: PMC10144641, DOI: 10.1093/aje/kwac181.
- Re-evaluating the health impact and cost-effectiveness of tuberculosis preventive treatment for modern HIV cohorts on antiretroviral therapy: a modelling analysis using data from TanzaniaZhu J, Lyatuu G, Sudfeld CR, Kiravu A, Sando D, Machumi L, Minde J, Chisonjela F, Cohen T, Menzies NA. Re-evaluating the health impact and cost-effectiveness of tuberculosis preventive treatment for modern HIV cohorts on antiretroviral therapy: a modelling analysis using data from Tanzania The Lancet Global Health 2022, 10: e1646-e1654. PMID: 36240830, PMCID: PMC9553191, DOI: 10.1016/s2214-109x(22)00372-2.
- Budget impact of next-generation sequencing for diagnosis of TB drug resistance in MoldovaCates L, Codreanu A, Ciobanu N, Fosburgh H, Allender C, Centner H, Engelthaler D, Crudu V, Cohen T, Menzies N. Budget impact of next-generation sequencing for diagnosis of TB drug resistance in Moldova The International Journal Of Tuberculosis And Lung Disease 2022, 26: 963-969. PMID: 36163669, DOI: 10.5588/ijtld.22.0104.
- A spatial-mechanistic model to estimate subnational tuberculosis burden with routinely collected data: An application in Brazilian municipalitiesChitwood M, Alves L, Bartholomay P, Couto R, Sanchez M, Castro M, Cohen T, Menzies N. A spatial-mechanistic model to estimate subnational tuberculosis burden with routinely collected data: An application in Brazilian municipalities PLOS Global Public Health 2022, 2: e0000725. DOI: 10.1371/journal.pgph.0000725.
- A spatial-mechanistic model to estimate subnational tuberculosis burden with routinely collected data: An application in Brazilian municipalitiesChitwood M, Alves L, Bartholomay P, Couto R, Sanchez M, Castro M, Cohen T, Menzies N. A spatial-mechanistic model to estimate subnational tuberculosis burden with routinely collected data: An application in Brazilian municipalities PLOS Global Public Health 2022, 2: e0000725. PMID: 36962578, PMCID: PMC10021638, DOI: 10.1371/journal.pgph.0000725.
- National survey in South Africa reveals high tuberculosis prevalence among previously treated peopleMarx FM, Hesseling AC, Martinson N, Theron G, Cohen T. National survey in South Africa reveals high tuberculosis prevalence among previously treated people The Lancet Infectious Diseases 2022, 22: 1273. PMID: 36029778, DOI: 10.1016/s1473-3099(22)00494-7.
- Reconstructing the course of the COVID-19 epidemic over 2020 for US states and counties: Results of a Bayesian evidence synthesis modelChitwood MH, Russi M, Gunasekera K, Havumaki J, Klaassen F, Pitzer VE, Salomon JA, Swartwood NA, Warren JL, Weinberger DM, Cohen T, Menzies NA. Reconstructing the course of the COVID-19 epidemic over 2020 for US states and counties: Results of a Bayesian evidence synthesis model PLOS Computational Biology 2022, 18: e1010465. PMID: 36040963, PMCID: PMC9467347, DOI: 10.1371/journal.pcbi.1010465.
- Excess tuberculosis cases and deaths following an economic recession in Brazil: an analysis of nationally representative disease registry dataLi Y, de Macedo Couto R, Pelissari DM, Costa Alves L, Bartholomay P, Maciel EL, Sanchez M, Castro MC, Cohen T, Menzies NA. Excess tuberculosis cases and deaths following an economic recession in Brazil: an analysis of nationally representative disease registry data The Lancet Global Health 2022, 10: e1463-e1472. PMID: 36049488, PMCID: PMC9472578, DOI: 10.1016/s2214-109x(22)00320-5.
- Population Immunity to Pre-Omicron and Omicron Severe Acute Respiratory Syndrome Coronavirus 2 Variants in US States and Counties Through 1 December 2021Klaassen F, Chitwood MH, Cohen T, Pitzer VE, Russi M, Swartwood NA, Salomon JA, Menzies NA. Population Immunity to Pre-Omicron and Omicron Severe Acute Respiratory Syndrome Coronavirus 2 Variants in US States and Counties Through 1 December 2021 Clinical Infectious Diseases 2022, 76: e350-e359. PMID: 35717642, PMCID: PMC9214178, DOI: 10.1093/cid/ciac438.
- Predicting resistance to fluoroquinolones among patients with rifampicin-resistant tuberculosis using machine learning methodsYou S, Chitwood MH, Gunasekera KS, Crudu V, Codreanu A, Ciobanu N, Furin J, Cohen T, Warren JL, Yaesoubi R. Predicting resistance to fluoroquinolones among patients with rifampicin-resistant tuberculosis using machine learning methods PLOS Digital Health 2022, 1: e0000059. PMID: 36177394, PMCID: PMC9518704, DOI: 10.1371/journal.pdig.0000059.
- Neighbourhood prevalence-to-notification ratios for adult bacteriologically-confirmed tuberculosis reveals hotspots of underdiagnosis in Blantyre, MalawiKhundi M, Carpenter JR, Corbett EL, Feasey HRA, Soko RN, Nliwasa M, Twabi H, Chiume L, Burke RM, Horton KC, Dodd PJ, Cohen T, MacPherson P. Neighbourhood prevalence-to-notification ratios for adult bacteriologically-confirmed tuberculosis reveals hotspots of underdiagnosis in Blantyre, Malawi PLOS ONE 2022, 17: e0268749. PMID: 35605004, PMCID: PMC9126376, DOI: 10.1371/journal.pone.0268749.
- Population immunity to pre-Omicron and Omicron SARS-CoV-2 variants in US states and counties through December 1, 2021.Klaassen F, Chitwood MH, Cohen T, Pitzer VE, Russi M, Swartwood NA, Salomon JA, Menzies NA. Population immunity to pre-Omicron and Omicron SARS-CoV-2 variants in US states and counties through December 1, 2021. MedRxiv : The Preprint Server For Health Sciences 2022 PMID: 34981078, PMCID: PMC8722621, DOI: 10.1101/2021.12.23.21268272.
- Racial/Ethnic Segregation and Access to COVID-19 Testing: Spatial Distribution of COVID-19 Testing Sites in the Four Largest Highly Segregated Cities in the United StatesAsabor EN, Warren JL, Cohen T. Racial/Ethnic Segregation and Access to COVID-19 Testing: Spatial Distribution of COVID-19 Testing Sites in the Four Largest Highly Segregated Cities in the United States American Journal Of Public Health 2022, 112: 518-526. PMID: 35196059, PMCID: PMC8887160, DOI: 10.2105/ajph.2021.306558.
- Phylogeography and transmission of M. tuberculosis in Moldova: A prospective genomic analysisYang C, Sobkowiak B, Naidu V, Codreanu A, Ciobanu N, Gunasekera KS, Chitwood MH, Alexandru S, Bivol S, Russi M, Havumaki J, Cudahy P, Fosburgh H, Allender CJ, Centner H, Engelthaler DM, Menzies NA, Warren JL, Crudu V, Colijn C, Cohen T. Phylogeography and transmission of M. tuberculosis in Moldova: A prospective genomic analysis PLOS Medicine 2022, 19: e1003933. PMID: 35192619, PMCID: PMC8903246, DOI: 10.1371/journal.pmed.1003933.
- Evaluating spatially adaptive guidelines for the treatment of gonorrhea to reduce the incidence of gonococcal infection and increase the effective lifespan of antibioticsYaesoubi R, Cohen T, Hsu K, Gift TL, St. Cyr SB, Salomon JA, Grad YH. Evaluating spatially adaptive guidelines for the treatment of gonorrhea to reduce the incidence of gonococcal infection and increase the effective lifespan of antibiotics PLOS Computational Biology 2022, 18: e1009842. PMID: 35139073, PMCID: PMC8863219, DOI: 10.1371/journal.pcbi.1009842.
- The role of prisons in disseminating tuberculosis in Brazil: A genomic epidemiology studyWalter KS, dos Santos PCP, Gonçalves TO, da Silva BO, da Silva Santos A, de Cássia Leite A, da Silva AM, Moreira F, de Oliveira RD, Lemos EF, Cunha E, Liu YE, Ko AI, Colijn C, Cohen T, Mathema B, Croda J, Andrews JR. The role of prisons in disseminating tuberculosis in Brazil: A genomic epidemiology study The Lancet Regional Health - Americas 2022, 9: 100186. PMID: 35647574, PMCID: PMC9140320, DOI: 10.1016/j.lana.2022.100186.
- Spatially targeted digital chest radiography to reduce tuberculosis in high-burden settings: A study of adaptive decision makingde Villiers AK, Dye C, Yaesoubi R, Cohen T, Marx FM. Spatially targeted digital chest radiography to reduce tuberculosis in high-burden settings: A study of adaptive decision making Epidemics 2022, 38: 100540. PMID: 35093849, PMCID: PMC8983993, DOI: 10.1016/j.epidem.2022.100540.
- vCOMBAT: a novel tool to create and visualize a computational model of bacterial antibiotic target-bindingTran VN, Shams A, Ascioglu S, Martinecz A, Liang J, Clarelli F, Mostowy R, Cohen T, Abel zur Wiesch P. vCOMBAT: a novel tool to create and visualize a computational model of bacterial antibiotic target-binding BMC Bioinformatics 2022, 23: 22. PMID: 34991453, PMCID: PMC8734216, DOI: 10.1186/s12859-021-04536-3.
- Mechanisms of antibiotic action shape the fitness landscapes of resistance mutations.Hemez C, Clarelli F, Palmer AC, Bleis C, Abel S, Chindelevitch L, Cohen T, Abel Zur Wiesch P. Mechanisms of antibiotic action shape the fitness landscapes of resistance mutations. Computational And Structural Biotechnology Journal 2022, 20: 4688-4703. PMID: 36147681, PMCID: PMC9463365, DOI: 10.1016/j.csbj.2022.08.030.
- A Cluster-based Method to Quantify Individual Heterogeneity in Tuberculosis TransmissionSmith JP, Gandhi NR, Silk BJ, Cohen T, Lopman B, Raz K, Winglee K, Kammerer S, Benkeser D, Kramer MR, Hill AN. A Cluster-based Method to Quantify Individual Heterogeneity in Tuberculosis Transmission Epidemiology 2021, 33: 217-227. PMID: 34907974, PMCID: PMC8886690, DOI: 10.1097/ede.0000000000001452.
- Global estimates of paediatric tuberculosis incidence in 2013–19: a mathematical modelling analysisYerramsetti S, Cohen T, Atun R, Menzies NA. Global estimates of paediatric tuberculosis incidence in 2013–19: a mathematical modelling analysis The Lancet Global Health 2021, 10: e207-e215. PMID: 34895517, PMCID: PMC8800006, DOI: 10.1016/s2214-109x(21)00462-9.
- Lifetime burden of disease due to incident tuberculosis: a global reappraisal including post-tuberculosis sequelaeMenzies NA, Quaife M, Allwood BW, Byrne AL, Coussens AK, Harries AD, Marx FM, Meghji J, Pedrazzoli D, Salomon JA, Sweeney S, van Kampen SC, Wallis RS, Houben RMGJ, Cohen T. Lifetime burden of disease due to incident tuberculosis: a global reappraisal including post-tuberculosis sequelae The Lancet Global Health 2021, 9: e1679-e1687. PMID: 34798027, PMCID: PMC8609280, DOI: 10.1016/s2214-109x(21)00367-3.
- Evaluating the reliability of mobility metrics from aggregated mobile phone data as proxies for SARS-CoV-2 transmission in the USA: a population-based studyKishore N, Taylor AR, Jacob PE, Vembar N, Cohen T, Buckee CO, Menzies NA. Evaluating the reliability of mobility metrics from aggregated mobile phone data as proxies for SARS-CoV-2 transmission in the USA: a population-based study The Lancet Digital Health 2021, 4: e27-e36. PMID: 34740555, PMCID: PMC8563007, DOI: 10.1016/s2589-7500(21)00214-4.
- The Health and Economic Benefits of Tests That Predict Future Progression to Tuberculosis DiseaseMenzies NA, Shrestha S, Parriott A, Marks SM, Hill AN, Dowdy DW, Shete PB, Cohen T, Salomon JA. The Health and Economic Benefits of Tests That Predict Future Progression to Tuberculosis Disease Epidemiology 2021, 33: 75-83. PMID: 34669631, PMCID: PMC8633045, DOI: 10.1097/ede.0000000000001418.
- Evolution and emergence of multidrug-resistant Mycobacterium tuberculosis in Chisinau, MoldovaBrown TS, Eldholm V, Brynildsrud O, Osnes M, Levy N, Stimson J, Colijn C, Alexandru S, Noroc E, Ciobanu N, Crudu V, Cohen T, Mathema B. Evolution and emergence of multidrug-resistant Mycobacterium tuberculosis in Chisinau, Moldova Microbial Genomics 2021, 7: 000620. PMID: 34431762, PMCID: PMC8549355, DOI: 10.1099/mgen.0.000620.
- Trends, Mechanisms, and Racial/Ethnic Differences of Tuberculosis Incidence in the US-Born Population Aged 50 Years or Older in the United StatesKim S, Cohen T, Horsburgh CR, Miller JW, Hill AN, Marks SM, Li R, Kammerer JS, Salomon JA, Menzies NA. Trends, Mechanisms, and Racial/Ethnic Differences of Tuberculosis Incidence in the US-Born Population Aged 50 Years or Older in the United States Clinical Infectious Diseases 2021, 74: ciab668. PMID: 34323959, PMCID: PMC8799750, DOI: 10.1093/cid/ciab668.
- Reconstructing the course of the COVID-19 epidemic over 2020 for US states and counties: results of a Bayesian evidence synthesis model.Chitwood MH, Russi M, Gunasekera K, Havumaki J, Klaassen F, Pitzer VE, Salomon JA, Swartwood NA, Warren JL, Weinberger DM, Cohen T, Menzies NA. Reconstructing the course of the COVID-19 epidemic over 2020 for US states and counties: results of a Bayesian evidence synthesis model. MedRxiv : The Preprint Server For Health Sciences 2021 PMID: 33851183, PMCID: PMC8043480, DOI: 10.1101/2020.06.17.20133983.
- Effectiveness of spatially targeted interventions for control of HIV, tuberculosis, leprosy and malaria: a systematic reviewKhundi M, Carpenter JR, Nliwasa M, Cohen T, Corbett EL, MacPherson P. Effectiveness of spatially targeted interventions for control of HIV, tuberculosis, leprosy and malaria: a systematic review BMJ Open 2021, 11: e044715. PMID: 34257091, PMCID: PMC8278879, DOI: 10.1136/bmjopen-2020-044715.
- Comparison of Estimated Effectiveness of Case-Based and Population-Based Interventions on COVID-19 Containment in TaiwanNg TC, Cheng HY, Chang HH, Liu CC, Yang CC, Jian SW, Liu DP, Cohen T, Lin HH. Comparison of Estimated Effectiveness of Case-Based and Population-Based Interventions on COVID-19 Containment in Taiwan JAMA Internal Medicine 2021, 181: 913-921. PMID: 33821922, PMCID: PMC8025126, DOI: 10.1001/jamainternmed.2021.1644.
- The impact of COVID-19 on TB: a review of the dataMcQuaid C, Vassall A, Cohen T, Fiekert K, COVID/TB Modelling Working Group *, White R. The impact of COVID-19 on TB: a review of the data The International Journal Of Tuberculosis And Lung Disease 2021, 25: 436-446. PMID: 34049605, PMCID: PMC8171247, DOI: 10.5588/ijtld.21.0148.
- The positive externalities of migrant-based TB control strategy in a Chinese urban population with internal migration: a transmission-dynamic modeling studyYang C, Kang J, Lu L, Guo X, Shen X, Cohen T, Menzies NA. The positive externalities of migrant-based TB control strategy in a Chinese urban population with internal migration: a transmission-dynamic modeling study BMC Medicine 2021, 19: 95. PMID: 33874940, PMCID: PMC8055441, DOI: 10.1186/s12916-021-01968-9.
- The Impact of Changes in Diagnostic Testing Practices on Estimates of COVID-19 Transmission in the United StatesPitzer VE, Chitwood M, Havumaki J, Menzies NA, Perniciaro S, Warren JL, Weinberger DM, Cohen T. The Impact of Changes in Diagnostic Testing Practices on Estimates of COVID-19 Transmission in the United States American Journal Of Epidemiology 2021, 190: kwab089. PMID: 33831148, PMCID: PMC8083380, DOI: 10.1093/aje/kwab089.
- The escalating tuberculosis crisis in central and South American prisonsWalter KS, Martinez L, Arakaki-Sanchez D, Sequera VG, Sanabria G, Cohen T, Ko AI, García-Basteiro AL, Rueda ZV, López-Olarte RA, Espinal MA, Croda J, Andrews JR. The escalating tuberculosis crisis in central and South American prisons The Lancet 2021, 397: 1591-1596. PMID: 33838724, PMCID: PMC9393884, DOI: 10.1016/s0140-6736(20)32578-2.
- Test, trace, and isolate in the UKCheng HY, Cohen T, Lin HH. Test, trace, and isolate in the UK The BMJ 2021, 372: n822. PMID: 33789886, DOI: 10.1136/bmj.n822.
- Incidence and prevalence of tuberculosis in incarcerated populations: a systematic review and meta-analysisCords O, Martinez L, Warren JL, O’Marr J, Walter KS, Cohen T, Zheng J, Ko AI, Croda J, Andrews JR. Incidence and prevalence of tuberculosis in incarcerated populations: a systematic review and meta-analysis The Lancet Public Health 2021, 6: e300-e308. PMID: 33765455, PMCID: PMC8168455, DOI: 10.1016/s2468-2667(21)00025-6.
- Reporting practices for genomic epidemiology of tuberculosis: a systematic review of the literature using STROME-ID guidelines as a benchmarkCheng B, Behr MA, Howden BP, Cohen T, Lee RS. Reporting practices for genomic epidemiology of tuberculosis: a systematic review of the literature using STROME-ID guidelines as a benchmark The Lancet Microbe 2021, 2: e115-e129. PMID: 33842904, PMCID: PMC8034592, DOI: 10.1016/s2666-5247(20)30201-9.
- Trends in Untreated Tuberculosis in Large Municipalities, Brazil, 2008–2017 - Volume 27, Number 3—March 2021 - Emerging Infectious Diseases journal - CDCChitwood MH, Pelissari DM, da Silva G, Bartholomay P, Rocha MS, Arakaki-Sanchez D, Sanchez M, Cohen T, Castro MC, Menzies NA. Trends in Untreated Tuberculosis in Large Municipalities, Brazil, 2008–2017 - Volume 27, Number 3—March 2021 - Emerging Infectious Diseases journal - CDC Emerging Infectious Diseases 2021, 27: 957-960. PMID: 33622464, PMCID: PMC7920690, DOI: 10.3201/eid2703.204094.
- Laboratory costs of diagnosing TB in a high multidrug-resistant TB settingCates L, Crudu V, Codreanu A, Ciobanu N, Fosburgh H, Cohen T, Menzies N. Laboratory costs of diagnosing TB in a high multidrug-resistant TB setting The International Journal Of Tuberculosis And Lung Disease 2021, 25: 228-230. PMID: 33688812, PMCID: PMC7948759, DOI: 10.5588/ijtld.20.0586.
- Bayesian evidence synthesis to estimate subnational TB incidence: An application in BrazilChitwood MH, Pelissari DM, da Silva G, Bartholomay P, Rocha MS, Sanchez M, Arakaki-Sanchez D, Glaziou P, Cohen T, Castro MC, Menzies NA. Bayesian evidence synthesis to estimate subnational TB incidence: An application in Brazil Epidemics 2021, 35: 100443. PMID: 33676092, PMCID: PMC8252152, DOI: 10.1016/j.epidem.2021.100443.
- Protective impacts of household-based tuberculosis contact tracing are robust across endemic incidence levels and community contact patternsHavumaki J, Cohen T, Zhai C, Miller JC, Guikema SD, Eisenberg MC, Zelner J. Protective impacts of household-based tuberculosis contact tracing are robust across endemic incidence levels and community contact patterns PLOS Computational Biology 2021, 17: e1008713. PMID: 33556077, PMCID: PMC7895355, DOI: 10.1371/journal.pcbi.1008713.
- Adaptive Policies to Balance Health Benefits and Economic Costs of Physical Distancing Interventions during the COVID-19 PandemicYaesoubi R, Havumaki J, Chitwood MH, Menzies NA, Gonsalves G, Salomon JA, Paltiel AD, Cohen T. Adaptive Policies to Balance Health Benefits and Economic Costs of Physical Distancing Interventions during the COVID-19 Pandemic Medical Decision Making 2021, 41: 386-392. PMID: 33504258, PMCID: PMC8084913, DOI: 10.1177/0272989x21990371.
- Development of a Treatment-decision Algorithm for Human Immunodeficiency Virus–uninfected Children Evaluated for Pulmonary TuberculosisGunasekera KS, Walters E, van der Zalm MM, Palmer M, Warren JL, Hesseling AC, Cohen T, Seddon JA. Development of a Treatment-decision Algorithm for Human Immunodeficiency Virus–uninfected Children Evaluated for Pulmonary Tuberculosis Clinical Infectious Diseases 2021, 73: e904-e912. PMID: 33449999, PMCID: PMC8366829, DOI: 10.1093/cid/ciab018.
- Continuity of TB services during the COVID-19 pandemic in ChinaShen X, Sha W, Yang C, Pan Q, Cohen T, Cheng S, Cai Q, Kan X, Zong P, Zeng Z, Tan S, Liang R, Bai L, Xia J, Wu S, Sun P, Wu G, Cai C, Wang X, Ai K, Liu J, Yuan Z. Continuity of TB services during the COVID-19 pandemic in China The International Journal Of Tuberculosis And Lung Disease 2021, 25: 81-83. PMID: 33384053, DOI: 10.5588/ijtld.20.0632.
- Evaluation of 6-Month Versus Continuous Isoniazid Preventive Therapy for Mycobacterium tuberculosis in Adults Living With HIV/AIDS in Malawi.Hsieh YL, Jahn A, Menzies NA, Yaesoubi R, Salomon JA, Girma B, Gunde L, Eaton JW, Auld A, Odo M, Kiyiika CN, Kalua T, Chiwandira B, Mpunga JU, Mbendra K, Corbett L, Hosseinipour MC, Cohen T, Kunkel A. Evaluation of 6-Month Versus Continuous Isoniazid Preventive Therapy for Mycobacterium tuberculosis in Adults Living With HIV/AIDS in Malawi. JAIDS Journal Of Acquired Immune Deficiency Syndromes 2020, 85: 643-650. PMID: 33177475, PMCID: PMC8564780, DOI: 10.1097/qai.0000000000002497.
- Impact of Effective Global Tuberculosis Control on Health and Economic Outcomes in the United StatesMenzies NA, Bellerose M, Testa C, Swartwood N, Malyuta Y, Cohen T, Marks SM, Hill AN, Date AA, Maloney SA, Bowden SE, Grills AW, Salomon JA. Impact of Effective Global Tuberculosis Control on Health and Economic Outcomes in the United States American Journal Of Respiratory And Critical Care Medicine 2020, 202: 1567-1575. PMID: 32645277, PMCID: PMC7706168, DOI: 10.1164/rccm.202003-0526oc.
- High-resolution estimates of tuberculosis incidence among non-U.S.-born persons residing in the United States, 2000–2016Hill AN, Cohen T, Salomon JA, Menzies NA. High-resolution estimates of tuberculosis incidence among non-U.S.-born persons residing in the United States, 2000–2016 Epidemics 2020, 33: 100419. PMID: 33242759, PMCID: PMC7808561, DOI: 10.1016/j.epidem.2020.100419.
- Tracking and predicting U.S. influenza activity with a real-time surveillance networkLeuba SI, Yaesoubi R, Antillon M, Cohen T, Zimmer C. Tracking and predicting U.S. influenza activity with a real-time surveillance network PLOS Computational Biology 2020, 16: e1008180. PMID: 33137088, PMCID: PMC7707518, DOI: 10.1371/journal.pcbi.1008180.
- Risk factors for recurrent tuberculosis after successful treatment in a high burden setting: a cohort studyCudahy PGT, Wilson D, Cohen T. Risk factors for recurrent tuberculosis after successful treatment in a high burden setting: a cohort study BMC Infectious Diseases 2020, 20: 789. PMID: 33097000, PMCID: PMC7585300, DOI: 10.1186/s12879-020-05515-4.
- Estimation of Excess Deaths Associated With the COVID-19 Pandemic in the United States, March to May 2020Weinberger DM, Chen J, Cohen T, Crawford FW, Mostashari F, Olson D, Pitzer VE, Reich NG, Russi M, Simonsen L, Watkins A, Viboud C. Estimation of Excess Deaths Associated With the COVID-19 Pandemic in the United States, March to May 2020 JAMA Internal Medicine 2020, 180: 1336-1344. PMID: 32609310, PMCID: PMC7330834, DOI: 10.1001/jamainternmed.2020.3391.
- Time Since Infection and Risks of Future Disease for Individuals with Mycobacterium tuberculosis Infection in the United StatesMenzies NA, Swartwood N, Testa C, Malyuta Y, Hill AN, Marks SM, Cohen T, Salomon JA. Time Since Infection and Risks of Future Disease for Individuals with Mycobacterium tuberculosis Infection in the United States Epidemiology 2020, 32: 70-78. PMID: 33009253, PMCID: PMC7707158, DOI: 10.1097/ede.0000000000001271.
- An evaluation of 6-month versus continuous isoniazid preventive therapy for M. tuberculosis in adults living with HIV/AIDS in Malawi.Hsieh YL, Jahn A, Menzies NA, Yaesoubi R, Salomon JA, Girma B, Gunde L, Eaton JW, Auld A, Odo M, Kiyiika CN, Kalua T, Chiwandira B, Mpunga JU, Mbendra K, Corbett L, Hosseinipour MC, Cohen T, Kunkel A. An evaluation of 6-month versus continuous isoniazid preventive therapy for M. tuberculosis in adults living with HIV/AIDS in Malawi. Journal Of Acquired Immune Deficiency Syndromes (1999) 2020 PMID: 32925361, DOI: 10.1097/QAI.0000000000002497.
- Children as sentinels of tuberculosis transmission: disease mapping of programmatic dataGunasekera KS, Zelner J, Becerra MC, Contreras C, Franke MF, Lecca L, Murray MB, Warren JL, Cohen T. Children as sentinels of tuberculosis transmission: disease mapping of programmatic data BMC Medicine 2020, 18: 234. PMID: 32873309, PMCID: PMC7466499, DOI: 10.1186/s12916-020-01702-x.
- Cost-effectiveness of post-treatment follow-up examinations and secondary prevention of tuberculosis in a high-incidence setting: a model-based analysisMarx FM, Cohen T, Menzies NA, Salomon JA, Theron G, Yaesoubi R. Cost-effectiveness of post-treatment follow-up examinations and secondary prevention of tuberculosis in a high-incidence setting: a model-based analysis The Lancet Global Health 2020, 8: e1223-e1233. PMID: 32827484, PMCID: PMC7549318, DOI: 10.1016/s2214-109x(20)30227-8.
- Ongoing challenges to understanding multidrug- and rifampicin-resistant tuberculosis in children versus adultsMcQuaid CF, Cohen T, Dean AS, Houben RMGJ, Knight GM, Zignol M, White RG. Ongoing challenges to understanding multidrug- and rifampicin-resistant tuberculosis in children versus adults European Respiratory Journal 2020, 57: 2002504. PMID: 32855219, DOI: 10.1183/13993003.02504-2020.
- Drug-target binding quantitatively predicts optimal antibiotic dose levels in quinolonesClarelli F, Palmer A, Singh B, Storflor M, Lauksund S, Cohen T, Abel S, Wiesch P. Drug-target binding quantitatively predicts optimal antibiotic dose levels in quinolones PLOS Computational Biology 2020, 16: e1008106. PMID: 32797079, PMCID: PMC7449454, DOI: 10.1371/journal.pcbi.1008106.
- Genomic variant-identification methods may alter Mycobacterium tuberculosis transmission inferencesWalter KS, Colijn C, Cohen T, Mathema B, Liu Q, Bowers J, Engelthaler DM, Narechania A, Lemmer D, Croda J, Andrews JR. Genomic variant-identification methods may alter Mycobacterium tuberculosis transmission inferences Microbial Genomics 2020, 6: mgen000418. PMID: 32735210, PMCID: PMC7641424, DOI: 10.1099/mgen.0.000418.
- Household studies provide key insights on the transmission of, and susceptibility to, SARS-CoV-2Pitzer VE, Cohen T. Household studies provide key insights on the transmission of, and susceptibility to, SARS-CoV-2 The Lancet Infectious Diseases 2020, 20: 1103-1104. PMID: 32562602, PMCID: PMC7832097, DOI: 10.1016/s1473-3099(20)30514-4.
- Adaptive policies for use of physical distancing interventions during the COVID-19 pandemic.Yaesoubi R, Havumaki J, Chitwood M, Menzies NA, Gonsalves G, Salomon JA, Paltiel AD, Cohen T. Adaptive policies for use of physical distancing interventions during the COVID-19 pandemic. MedRxiv : The Preprint Server For Health Sciences 2020 PMID: 32577698, PMCID: PMC7302307, DOI: 10.1101/2020.05.29.20065714.
- Estimating the early death toll of COVID-19 in the United States.Weinberger DM, Cohen T, Crawford FW, Mostashari F, Olson D, Pitzer VE, Reich NG, Russi M, Simonsen L, Watkins A, Viboud C. Estimating the early death toll of COVID-19 in the United States. MedRxiv : The Preprint Server For Health Sciences 2020 PMID: 32511293, PMCID: PMC7217085, DOI: 10.1101/2020.04.15.20066431.
- The impact of changes in diagnostic testing practices on estimates of COVID-19 transmission in the United States.Pitzer VE, Chitwood M, Havumaki J, Menzies NA, Perniciaro S, Warren JL, Weinberger DM, Cohen T. The impact of changes in diagnostic testing practices on estimates of COVID-19 transmission in the United States. MedRxiv : The Preprint Server For Health Sciences 2020 PMID: 32511624, PMCID: PMC7276051, DOI: 10.1101/2020.04.20.20073338.
- Adaptive guidelines for the treatment of gonorrhea to increase the effective life span of antibiotics among men who have sex with men in the United States: A mathematical modeling studyYaesoubi R, Cohen T, Hsu K, Gift TL, Chesson H, Salomon JA, Grad YH. Adaptive guidelines for the treatment of gonorrhea to increase the effective life span of antibiotics among men who have sex with men in the United States: A mathematical modeling study PLOS Medicine 2020, 17: e1003077. PMID: 32243443, PMCID: PMC7122693, DOI: 10.1371/journal.pmed.1003077.
- Transmission Modeling with Regression Adjustment for Analyzing Household-based Studies of Infectious Disease: Application to Tuberculosis.Crawford FW, Marx FM, Zelner J, Cohen T. Transmission Modeling with Regression Adjustment for Analyzing Household-based Studies of Infectious Disease: Application to Tuberculosis. Epidemiology 2020, 31: 238-247. PMID: 31764276, PMCID: PMC7718772, DOI: 10.1097/ede.0000000000001143.
- The risk of tuberculosis in children after close exposure: a systematic review and individual-participant meta-analysisMartinez L, Cords O, Horsburgh C, Andrews J, Consortium P, Acuna-Villaorduna C, Ahuja S, Altet N, Augusto O, Baliashvili D, Basu S, Becerra M, Bonnet M, Boom W, Borgdorff M, Boulahbal F, Carvalho A, Cayla J, Chakhaia T, Chan P, Cohen T, Croda J, Datta S, del Corral H, Denholm J, Dietze R, Dobler C, Donkor S, Egere U, Ellner J, Espinal M, Evans C, Fang C, Fielding K, Fox G, García L, García-Basteiro A, Geis S, Graham S, Grandjean L, Hannoun D, Hatherill M, Hauri A, Hesseling A, Hill P, Huang L, Huerga H, Hussain R, Jarlsberg L, Jones-López E, Kato S, Kato-Maeda M, Kampmann B, Kirchner H, Kritski A, Lange C, Lee C, Lee L, Lee M, Lemos A, Lienhardt C, Ling D, Liu Q, Lo N, Long R, Lopez-Varela E, Lu P, Magee M, Malone L, Mandalakas A, Martinson N, Mazahir R, Murray M, Netto E, Otero L, Parsonnet J, Reingold A, Schaaf H, Seddon J, Sharma S, Singh J, Singh S, Sloot R, Sotgiu G, Stein C, Iqbal N, Triasih R, Trieu L, van der Loeff M, Van der Stuyft P, van Schalkwyk C, Vashishtha R, Verhagen L, Villalba J, Wang J, Whalen C, Yoshiyama T, Zar H, Zellweger J, Zhu L. The risk of tuberculosis in children after close exposure: a systematic review and individual-participant meta-analysis The Lancet 2020, 395: 973-984. PMID: 32199484, PMCID: PMC7289654, DOI: 10.1016/s0140-6736(20)30166-5.
- Smoking and HIV associated with subclinical tuberculosis: analysis of a population-based prevalence surveyGunasekera K, Cohen T, Gao W, Ayles H, Godfrey-Faussett P, Claassens M. Smoking and HIV associated with subclinical tuberculosis: analysis of a population-based prevalence survey The International Journal Of Tuberculosis And Lung Disease 2020, 24: 340-346. PMID: 32228765, DOI: 10.5588/ijtld.19.0387.
- Yield, Efficiency, and Costs of Mass Screening Algorithms for Tuberculosis in Brazilian Prisonsda Silva Santos A, de Oliveira R, Lemos EF, Lima F, Cohen T, Cords O, Martinez L, Gonçalves C, Ko A, Andrews JR, Croda J. Yield, Efficiency, and Costs of Mass Screening Algorithms for Tuberculosis in Brazilian Prisons Clinical Infectious Diseases 2020, 72: 771-777. PMID: 32064514, PMCID: PMC7935388, DOI: 10.1093/cid/ciaa135.
- Post-tuberculosis mortality and morbidity: valuing the hidden epidemicQuaife M, Houben RMGJ, Allwood B, Cohen T, Coussens AK, Harries AD, van Kampen S, Marx FM, Sweeney S, Wallis RS, Menzies NA. Post-tuberculosis mortality and morbidity: valuing the hidden epidemic The Lancet Respiratory Medicine 2020, 8: 332-333. PMID: 32057300, DOI: 10.1016/s2213-2600(20)30039-4.
- Comparative Modeling of Tuberculosis Epidemiology and Policy Outcomes in CaliforniaMenzies NA, Parriott A, Shrestha S, Dowdy DW, Cohen T, Salomon JA, Marks SM, Hill AN, Winston CA, Asay GR, Barry P, Readhead A, Flood J, Kahn JG, Shete PB. Comparative Modeling of Tuberculosis Epidemiology and Policy Outcomes in California American Journal Of Respiratory And Critical Care Medicine 2020, 201: 356-365. PMID: 31626560, PMCID: PMC7464931, DOI: 10.1164/rccm.201907-1289oc.
- Cost‐effectiveness of expanding the capacity of opioid agonist treatment in Ukraine: dynamic modeling analysisMorozova O, Crawford FW, Cohen T, Paltiel AD, Altice FL. Cost‐effectiveness of expanding the capacity of opioid agonist treatment in Ukraine: dynamic modeling analysis Addiction 2019, 115: 437-450. PMID: 31478285, PMCID: PMC7015766, DOI: 10.1111/add.14797.
- Transmissibility and potential for disease progression of drug resistant Mycobacterium tuberculosis: prospective cohort studyBecerra MC, Huang CC, Lecca L, Bayona J, Contreras C, Calderon R, Yataco R, Galea J, Zhang Z, Atwood S, Cohen T, Mitnick CD, Farmer P, Murray M. Transmissibility and potential for disease progression of drug resistant Mycobacterium tuberculosis: prospective cohort study The BMJ 2019, 367: l5894. PMID: 31649017, PMCID: PMC6812583, DOI: 10.1136/bmj.l5894.
- Notification of relapse and other previously treated tuberculosis in the 52 health districts of South AfricaMarx F, Cohen T, Lombard C, Hesseling A, Dlamini S, Beyers N, Naidoo P. Notification of relapse and other previously treated tuberculosis in the 52 health districts of South Africa The International Journal Of Tuberculosis And Lung Disease 2019, 23: 891-899. PMID: 31533878, DOI: 10.5588/ijtld.18.0609.
- Cost-Effectiveness of Alternative Uses of Polyvalent Meningococcal Vaccines in Niger: An Agent-Based Transmission Modeling StudyArifin SMN, Zimmer C, Trotter C, Colombini A, Sidikou F, LaForce FM, Cohen T, Yaesoubi R. Cost-Effectiveness of Alternative Uses of Polyvalent Meningococcal Vaccines in Niger: An Agent-Based Transmission Modeling Study Medical Decision Making 2019, 39: 553-567. PMID: 31268405, PMCID: PMC6786941, DOI: 10.1177/0272989x19859899.
- Correction: Evaluating strategies for control of tuberculosis in prisons and prevention of spillover into communities: An observational and modeling study from BrazilMabud TS, de Lourdes Delgado Alves M, Ko AI, Basu S, Walter KS, Cohen T, Mathema B, Colijn C, Lemos E, Croda J, Andrews JR. Correction: Evaluating strategies for control of tuberculosis in prisons and prevention of spillover into communities: An observational and modeling study from Brazil PLOS Medicine 2019, 16: e1002764. PMID: 30822314, PMCID: PMC6396896, DOI: 10.1371/journal.pmed.1002764.
- Disparities in access to diagnosis and care in Blantyre, Malawi, identified through enhanced tuberculosis surveillance and spatial analysisMacPherson P, Khundi M, Nliwasa M, Choko AT, Phiri VK, Webb EL, Dodd PJ, Cohen T, Harris R, Corbett EL. Disparities in access to diagnosis and care in Blantyre, Malawi, identified through enhanced tuberculosis surveillance and spatial analysis BMC Medicine 2019, 17: 21. PMID: 30691470, PMCID: PMC6350280, DOI: 10.1186/s12916-019-1260-6.
- Beyond the SNP Threshold: Identifying Outbreak Clusters Using Inferred Transmissions.Stimson J, Gardy J, Mathema B, Crudu V, Cohen T, Colijn C. Beyond the SNP Threshold: Identifying Outbreak Clusters Using Inferred Transmissions. Molecular Biology And Evolution 2019, 36: 587-603. PMID: 30690464, PMCID: PMC6389316, DOI: 10.1093/molbev/msy242.
- Evaluating strategies for control of tuberculosis in prisons and prevention of spillover into communities: An observational and modeling study from BrazilMabud TS, de Lourdes Delgado Alves M, Ko AI, Basu S, Walter KS, Cohen T, Mathema B, Colijn C, Lemos E, Croda J, Andrews JR. Evaluating strategies for control of tuberculosis in prisons and prevention of spillover into communities: An observational and modeling study from Brazil PLOS Medicine 2019, 16: e1002737. PMID: 30677013, PMCID: PMC6345418, DOI: 10.1371/journal.pmed.1002737.
- Spatially targeted screening to reduce tuberculosis transmission in high-incidence settingsCudahy PGT, Andrews JR, Bilinski A, Dowdy DW, Mathema B, Menzies NA, Salomon JA, Shrestha S, Cohen T. Spatially targeted screening to reduce tuberculosis transmission in high-incidence settings The Lancet Infectious Diseases 2018, 19: e89-e95. PMID: 30554997, PMCID: PMC6401264, DOI: 10.1016/s1473-3099(18)30443-2.
- The impact of migration on tuberculosis in the United StatesMenzies NA, Hill AN, Cohen T, Salomon JA. The impact of migration on tuberculosis in the United States The International Journal Of Tuberculosis And Lung Disease 2018, 22: 1392-1403. PMID: 30606311, PMCID: PMC6353558, DOI: 10.5588/ijtld.17.0185.
- Accurate quantification of uncertainty in epidemic parameter estimates and predictions using stochastic compartmental modelsZimmer C, Leuba SI, Cohen T, Yaesoubi R. Accurate quantification of uncertainty in epidemic parameter estimates and predictions using stochastic compartmental models Statistical Methods In Medical Research 2018, 28: 3591-3608. PMID: 30428780, PMCID: PMC6517086, DOI: 10.1177/0962280218805780.
- Trends in C-Reactive Protein, D-Dimer, and Fibrinogen during Therapy for HIV-Associated Multidrug-Resistant Tuberculosis.Cudahy PGT, Warren JL, Cohen T, Wilson D. Trends in C-Reactive Protein, D-Dimer, and Fibrinogen during Therapy for HIV-Associated Multidrug-Resistant Tuberculosis. American Journal Of Tropical Medicine And Hygiene 2018, 99: 1336-1341. PMID: 30226135, PMCID: PMC6221241, DOI: 10.4269/ajtmh.18-0322.
- Evaluation of tuberculosis treatment response with serial C-reactive protein measurementsWilson D, Moosa MS, Cohen T, Cudahy P, Aldous C, Maartens G. Evaluation of tuberculosis treatment response with serial C-reactive protein measurements Open Forum Infectious Diseases 2018, 5: ofy253. PMID: 30474046, PMCID: PMC6240901, DOI: 10.1093/ofid/ofy253.
- Use of daily Internet search query data improves real-time projections of influenza epidemicsZimmer C, Leuba SI, Yaesoubi R, Cohen T. Use of daily Internet search query data improves real-time projections of influenza epidemics Journal Of The Royal Society Interface 2018, 15: 20180220. PMID: 30305417, PMCID: PMC6228485, DOI: 10.1098/rsif.2018.0220.
- Investigating spillover of multidrug-resistant tuberculosis from a prison: a spatial and molecular epidemiological analysisWarren JL, Grandjean L, Moore DAJ, Lithgow A, Coronel J, Sheen P, Zelner JL, Andrews JR, Cohen T. Investigating spillover of multidrug-resistant tuberculosis from a prison: a spatial and molecular epidemiological analysis BMC Medicine 2018, 16: 122. PMID: 30071850, PMCID: PMC6091024, DOI: 10.1186/s12916-018-1111-x.
- Evidence sources on the natural history of latent tuberculosis infectionMenzies NA, Cohen T, Salomon JA. Evidence sources on the natural history of latent tuberculosis infection The Lancet Infectious Diseases 2018, 18: 834-835. PMID: 30064672, DOI: 10.1016/s1473-3099(18)30406-7.
- Towards better prediction of Mycobacterium tuberculosis lineages from MIRU-VNTR dataThain N, Le C, Crossa A, Ahuja SD, Meissner JS, Mathema B, Kreiswirth B, Kurepina N, Cohen T, Chindelevitch L. Towards better prediction of Mycobacterium tuberculosis lineages from MIRU-VNTR data Infection Genetics And Evolution 2018, 72: 59-66. PMID: 29960078, PMCID: PMC6708508, DOI: 10.1016/j.meegid.2018.06.029.
- Where is tuberculosis transmission happening? Insights from the literature, new tools to study transmission and implications for the elimination of tuberculosisAuld SC, Shah NS, Cohen T, Martinson NA, Gandhi NR. Where is tuberculosis transmission happening? Insights from the literature, new tools to study transmission and implications for the elimination of tuberculosis Respirology 2018, 23: 807-817. PMID: 29869818, PMCID: PMC6281783, DOI: 10.1111/resp.13333.
- Prospects for Tuberculosis Elimination in the United States: Results of a Transmission Dynamic Model.Menzies NA, Cohen T, Hill AN, Yaesoubi R, Galer K, Wolf E, Marks SM, Salomon JA. Prospects for Tuberculosis Elimination in the United States: Results of a Transmission Dynamic Model. American Journal Of Epidemiology 2018, 187: 2011-2020. PMID: 29762657, PMCID: PMC6119121, DOI: 10.1093/aje/kwy094.
- Internal migration and transmission dynamics of tuberculosis in Shanghai, China: an epidemiological, spatial, genomic analysisYang C, Lu L, Warren JL, Wu J, Jiang Q, Zuo T, Gan M, Liu M, Liu Q, DeRiemer K, Hong J, Shen X, Colijn C, Guo X, Gao Q, Cohen T. Internal migration and transmission dynamics of tuberculosis in Shanghai, China: an epidemiological, spatial, genomic analysis The Lancet Infectious Diseases 2018, 18: 788-795. PMID: 29681517, PMCID: PMC6035060, DOI: 10.1016/s1473-3099(18)30218-4.
- Progression from latent infection to active disease in dynamic tuberculosis transmission models: a systematic review of the validity of modelling assumptionsMenzies NA, Wolf E, Connors D, Bellerose M, Sbarra AN, Cohen T, Hill AN, Yaesoubi R, Galer K, White PJ, Abubakar I, Salomon JA. Progression from latent infection to active disease in dynamic tuberculosis transmission models: a systematic review of the validity of modelling assumptions The Lancet Infectious Diseases 2018, 18: e228-e238. PMID: 29653698, PMCID: PMC6070419, DOI: 10.1016/s1473-3099(18)30134-8.
- Pan-tuberculosis regimens: an argument forWallis RS, Cohen T, Menzies NA, Churchyard G. Pan-tuberculosis regimens: an argument for The Lancet Respiratory Medicine 2018, 6: 239-240. PMID: 29595501, DOI: 10.1016/s2213-2600(18)30096-1.
- Tuberculosis control interventions targeted to previously treated people in a high-incidence setting: a modelling studyMarx FM, Yaesoubi R, Menzies NA, Salomon JA, Bilinski A, Beyers N, Cohen T. Tuberculosis control interventions targeted to previously treated people in a high-incidence setting: a modelling study The Lancet Global Health 2018, 6: e426-e435. PMID: 29472018, PMCID: PMC5849574, DOI: 10.1016/s2214-109x(18)30022-6.
- ADAPTIVE DECISION‐MAKING DURING EPIDEMICSYaesoubi R, Cohen T. ADAPTIVE DECISION‐MAKING DURING EPIDEMICS 2018, 59-79. DOI: 10.1002/9781118960158.ch3.
- The cost-effectiveness of alternative vaccination strategies for polyvalent meningococcal vaccines in Burkina Faso: A transmission dynamic modeling studyYaesoubi R, Trotter C, Colijn C, Yaesoubi M, Colombini A, Resch S, Kristiansen PA, LaForce FM, Cohen T. The cost-effectiveness of alternative vaccination strategies for polyvalent meningococcal vaccines in Burkina Faso: A transmission dynamic modeling study PLOS Medicine 2018, 15: e1002495. PMID: 29364884, PMCID: PMC5783340, DOI: 10.1371/journal.pmed.1002495.
- Risk ratios for contagious outcomesMorozova O, Cohen T, Crawford FW. Risk ratios for contagious outcomes Journal Of The Royal Society Interface 2018, 15: 20170696. PMID: 29343627, PMCID: PMC5805970, DOI: 10.1098/rsif.2017.0696.
- Eliminating tuberculosis in low-burden countries.Jackson C, Cohen T, Rangaka MX, Abubakar I. Eliminating tuberculosis in low-burden countries. The International Journal Of Tuberculosis And Lung Disease 2018, 22: 3. PMID: 29297418, DOI: 10.5588/ijtld.17.0707.
- Drivers of Tuberculosis TransmissionMathema B, Andrews JR, Cohen T, Borgdorff MW, Behr M, Glynn JR, Rustomjee R, Silk BJ, Wood R. Drivers of Tuberculosis Transmission The Journal Of Infectious Diseases 2017, 216: s644-s653. PMID: 29112745, PMCID: PMC5853844, DOI: 10.1093/infdis/jix354.
- Polyclonal Pulmonary Tuberculosis Infections and Risk for Multidrug Resistance, Lima, Peru - Volume 23, Number 11—November 2017 - Emerging Infectious Diseases journal - CDCNathavitharana RR, Shi CX, Chindelevitch L, Calderon R, Zhang Z, Galea JT, Contreras C, Yataco R, Lecca L, Becerra MC, Murray MB, Cohen T. Polyclonal Pulmonary Tuberculosis Infections and Risk for Multidrug Resistance, Lima, Peru - Volume 23, Number 11—November 2017 - Emerging Infectious Diseases journal - CDC Emerging Infectious Diseases 2017, 23: 1887-1890. PMID: 29048297, PMCID: PMC5652442, DOI: 10.3201/eid2311.170077.
- Catastrophic costs potentially averted by tuberculosis control in India and South Africa: a modelling studyVerguet S, Riumallo-Herl C, Gomez GB, Menzies NA, Houben RMGJ, Sumner T, Lalli M, White RG, Salomon JA, Cohen T, Foster N, Chatterjee S, Sweeney S, Baena IG, Lönnroth K, Weil DE, Vassall A. Catastrophic costs potentially averted by tuberculosis control in India and South Africa: a modelling study The Lancet Global Health 2017, 5: e1123-e1132. PMID: 29025634, PMCID: PMC5640802, DOI: 10.1016/s2214-109x(17)30341-8.
- Protective effects of household-based TB interventions are robust to neighbourhood-level variation in exposure risk in Lima, Peru: a model-based analysis.Zelner J, Murray M, Becerra M, Galea J, Lecca L, Calderon R, Yataco R, Zhang Z, Cohen T. Protective effects of household-based TB interventions are robust to neighbourhood-level variation in exposure risk in Lima, Peru: a model-based analysis. International Journal Of Epidemiology 2017, 47: 185-192. PMID: 29025111, DOI: 10.1093/ije/dyx171.
- Antimicrobial Resistance Risks of Cholera Prophylaxis for United Nations PeacekeepersKunkel A, Lewnard JA, Pitzer VE, Cohen T. Antimicrobial Resistance Risks of Cholera Prophylaxis for United Nations Peacekeepers Antimicrobial Agents And Chemotherapy 2017, 61: e00026-17. PMID: 28533237, PMCID: PMC5527623, DOI: 10.1128/aac.00026-17.
- Population implications of the use of bedaquiline in people with extensively drug-resistant tuberculosis: are fears of resistance justified?Kunkel A, Furin J, Cohen T. Population implications of the use of bedaquiline in people with extensively drug-resistant tuberculosis: are fears of resistance justified? The Lancet Infectious Diseases 2017, 17: e429-e433. PMID: 28533094, DOI: 10.1016/s1473-3099(17)30299-2.
- A Multistrain Mathematical Model To Investigate the Role of Pyrazinamide in the Emergence of Extensively Drug-Resistant TuberculosisFofana MO, Shrestha S, Knight GM, Cohen T, White RG, Cobelens F, Dowdy DW. A Multistrain Mathematical Model To Investigate the Role of Pyrazinamide in the Emergence of Extensively Drug-Resistant Tuberculosis Antimicrobial Agents And Chemotherapy 2017, 61: e00498-16. PMID: 27956422, PMCID: PMC5328532, DOI: 10.1128/aac.00498-16.
- A Likelihood Approach for Real-Time Calibration of Stochastic Compartmental Epidemic ModelsZimmer C, Yaesoubi R, Cohen T. A Likelihood Approach for Real-Time Calibration of Stochastic Compartmental Epidemic Models PLOS Computational Biology 2017, 13: e1005257. PMID: 28095403, PMCID: PMC5240920, DOI: 10.1371/journal.pcbi.1005257.
- Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into the emergence and spread of multidrug resistanceManson AL, Cohen KA, Abeel T, Desjardins CA, Armstrong DT, Barry CE, Brand J, Chapman S, Cho S, Gabrielian A, Gomez J, Jodals A, Joloba M, Jureen P, Lee J, Malinga L, Maiga M, Nordenberg D, Noroc E, Romancenco E, Salazar A, Ssengooba W, Velayati A, Winglee K, Zalutskaya A, Via L, Cassell G, Dorman S, Ellner J, Farnia P, Galagan J, Rosenthal A, Crudu V, Homorodean D, Hsueh P, Narayanan S, Pym A, Skrahina A, Swaminathan S, Van der Walt M, Alland D, Bishai W, Cohen T, Hoffner S, Birren B, Earl A. Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into the emergence and spread of multidrug resistance Nature Genetics 2017, 49: 395-402. PMID: 28092681, PMCID: PMC5402762, DOI: 10.1038/ng.3767.
- Using Chemical Reaction Kinetics to Predict Optimal Antibiotic Treatment StrategiesWiesch P, Clarelli F, Cohen T. Using Chemical Reaction Kinetics to Predict Optimal Antibiotic Treatment Strategies PLOS Computational Biology 2017, 13: e1005321. PMID: 28060813, PMCID: PMC5257006, DOI: 10.1371/journal.pcbi.1005321.
- Priority-Setting for Novel Drug Regimens to Treat Tuberculosis: An Epidemiologic ModelKendall EA, Shrestha S, Cohen T, Nuermberger E, Dooley KE, Gonzalez-Angulo L, Churchyard GJ, Nahid P, Rich ML, Bansbach C, Forissier T, Lienhardt C, Dowdy DW. Priority-Setting for Novel Drug Regimens to Treat Tuberculosis: An Epidemiologic Model PLOS Medicine 2017, 14: e1002202. PMID: 28045934, PMCID: PMC5207633, DOI: 10.1371/journal.pmed.1002202.
- Second line drug susceptibility testing to inform the treatment of rifampin-resistant tuberculosis: a quantitative perspectiveKendall EA, Cohen T, Mitnick CD, Dowdy DW. Second line drug susceptibility testing to inform the treatment of rifampin-resistant tuberculosis: a quantitative perspective International Journal Of Infectious Diseases 2016, 56: 185-189. PMID: 28007660, PMCID: PMC5576040, DOI: 10.1016/j.ijid.2016.12.010.
- The contributions of Steve Lawn to the science, advocacy and policy of HIV-associated TBVan Rie A, Cohen T. The contributions of Steve Lawn to the science, advocacy and policy of HIV-associated TB The International Journal Of Tuberculosis And Lung Disease 2016, 20: 1563-1564. PMID: 27931328, DOI: 10.5588/ijtld.16.0771.
- Benefits of continuous isoniazid preventive therapy may outweigh resistance risks in a declining tuberculosis/HIV coepidemicKunkel A, Crawford FW, Shepherd J, Cohen T. Benefits of continuous isoniazid preventive therapy may outweigh resistance risks in a declining tuberculosis/HIV coepidemic AIDS 2016, 30: 2715-2723. PMID: 27782966, PMCID: PMC5089846, DOI: 10.1097/qad.0000000000001235.
- Genomic diversity in autopsy samples reveals within-host dissemination of HIV-associated Mycobacterium tuberculosisLieberman TD, Wilson D, Misra R, Xiong LL, Moodley P, Cohen T, Kishony R. Genomic diversity in autopsy samples reveals within-host dissemination of HIV-associated Mycobacterium tuberculosis Nature Medicine 2016, 22: 1470-1474. PMID: 27798613, PMCID: PMC5508070, DOI: 10.1038/nm.4205.
- Tradeoffs in Introduction Policies for the Anti-Tuberculosis Drug Bedaquiline: A Model-Based AnalysisKunkel A, Cobelens FG, Cohen T. Tradeoffs in Introduction Policies for the Anti-Tuberculosis Drug Bedaquiline: A Model-Based Analysis PLOS Medicine 2016, 13: e1002142. PMID: 27727274, PMCID: PMC5058480, DOI: 10.1371/journal.pmed.1002142.
- Feasibility of achieving the 2025 WHO global tuberculosis targets in South Africa, China, and India: a combined analysis of 11 mathematical modelsHouben RMGJ, Menzies NA, Sumner T, Huynh GH, Arinaminpathy N, Goldhaber-Fiebert JD, Lin HH, Wu CY, Mandal S, Pandey S, Suen SC, Bendavid E, Azman AS, Dowdy DW, Bacaër N, Rhines AS, Feldman MW, Handel A, Whalen CC, Chang ST, Wagner BG, Eckhoff PA, Trauer JM, Denholm JT, McBryde ES, Cohen T, Salomon JA, Pretorius C, Lalli M, Eaton JW, Boccia D, Hosseini M, Gomez GB, Sahu S, Daniels C, Ditiu L, Chin DP, Wang L, Chadha VK, Rade K, Dewan P, Hippner P, Charalambous S, Grant AD, Churchyard G, Pillay Y, Mametja LD, Kimerling ME, Vassall A, White RG. Feasibility of achieving the 2025 WHO global tuberculosis targets in South Africa, China, and India: a combined analysis of 11 mathematical models The Lancet Global Health 2016, 4: e806-e815. PMID: 27720688, PMCID: PMC6375908, DOI: 10.1016/s2214-109x(16)30199-1.
- Cost-effectiveness and resource implications of aggressive action on tuberculosis in China, India, and South Africa: a combined analysis of nine modelsMenzies NA, Gomez GB, Bozzani F, Chatterjee S, Foster N, Baena IG, Laurence YV, Qiang S, Siroka A, Sweeney S, Verguet S, Arinaminpathy N, Azman AS, Bendavid E, Chang ST, Cohen T, Denholm JT, Dowdy DW, Eckhoff PA, Goldhaber-Fiebert JD, Handel A, Huynh GH, Lalli M, Lin HH, Mandal S, McBryde ES, Pandey S, Salomon JA, Suen SC, Sumner T, Trauer JM, Wagner BG, Whalen CC, Wu CY, Boccia D, Chadha VK, Charalambous S, Chin DP, Churchyard G, Daniels C, Dewan P, Ditiu L, Eaton JW, Grant AD, Hippner P, Hosseini M, Mametja D, Pretorius C, Pillay Y, Rade K, Sahu S, Wang L, Houben RMGJ, Kimerling ME, White RG, Vassall A. Cost-effectiveness and resource implications of aggressive action on tuberculosis in China, India, and South Africa: a combined analysis of nine models The Lancet Global Health 2016, 4: e816-e826. PMID: 27720689, PMCID: PMC5527122, DOI: 10.1016/s2214-109x(16)30265-0.
- Multidrug-resistant tuberculosis treatment failure detection depends on monitoring interval and microbiological method.Mitnick CD, White RA, Lu C, Rodriguez CA, Bayona J, Becerra MC, Burgos M, Centis R, Cohen T, Cox H, D'Ambrosio L, Danilovitz M, Falzon D, Gelmanova IY, Gler MT, Grinsdale JA, Holtz TH, Keshavjee S, Leimane V, Menzies D, Migliori GB, Milstein MB, Mishustin SP, Pagano M, Quelapio MI, Shean K, Shin SS, Tolman AW, van der Walt ML, Van Deun A, Viiklepp P. Multidrug-resistant tuberculosis treatment failure detection depends on monitoring interval and microbiological method. The European Respiratory Journal 2016, 48: 1160-1170. PMID: 27587552, PMCID: PMC5045442, DOI: 10.1183/13993003.00462-2016.
- Benefits of continuous isoniazid preventive therapy may outweigh resistance risks in a declining TB/HIV co-epidemic.Kunkel A, Crawford FW, Shepherd J, Cohen T. Benefits of continuous isoniazid preventive therapy may outweigh resistance risks in a declining TB/HIV co-epidemic. AIDS (London, England) 2016 PMID: 27536981.
- Reply to Chen et al.Cohen T, Chindelevitch L, Misra R, Kempner ME, Galea J, Moodley P, Wilson D. Reply to Chen et al. The Journal Of Infectious Diseases 2016, 214: 1287-8. PMID: 27493235, PMCID: PMC5034957, DOI: 10.1093/infdis/jiw351.
- Connectivity of diagnostic technologies: improving surveillance and accelerating tuberculosis eliminationAndre E, Isaacs C, Affolabi D, Alagna R, Brockmann D, de Jong BC, Cambau E, Churchyard G, Cohen T, Delmee M, Delvenne JC, Farhat M, Habib A, Holme P, Keshavjee S, Khan A, Lightfoot P, Moore D, Moreno Y, Mundade Y, Pai M, Patel S, Nyaruhirira AU, Rocha LE, Takle J, Trébucq A, Creswell J, Boehme C. Connectivity of diagnostic technologies: improving surveillance and accelerating tuberculosis elimination The International Journal Of Tuberculosis And Lung Disease 2016, 20: 999-1003. PMID: 27393530, PMCID: PMC4937753, DOI: 10.5588/ijtld.16.0015.
- Identifying cost‐effective dynamic policies to control epidemicsYaesoubi R, Cohen T. Identifying cost‐effective dynamic policies to control epidemics Statistics In Medicine 2016, 35: 5189-5209. PMID: 27449759, PMCID: PMC5096998, DOI: 10.1002/sim.7047.
- High burden of prevalent tuberculosis among previously treated people in Southern Africa suggests potential for targeted control interventionsMarx FM, Floyd S, Ayles H, Godfrey-Faussett P, Beyers N, Cohen T. High burden of prevalent tuberculosis among previously treated people in Southern Africa suggests potential for targeted control interventions European Respiratory Journal 2016, 48: 1227-1230. PMID: 27390274, PMCID: PMC5512114, DOI: 10.1183/13993003.00716-2016.
- Spatial measurement errors in the field of spatial epidemiologyZhang Z, Manjourides J, Cohen T, Hu Y, Jiang Q. Spatial measurement errors in the field of spatial epidemiology International Journal Of Health Geographics 2016, 15: 21. PMID: 27368370, PMCID: PMC4930612, DOI: 10.1186/s12942-016-0049-5.
- Smear positivity in paediatric and adult tuberculosis: systematic review and meta-analysisKunkel A, Abel zur Wiesch P, Nathavitharana RR, Marx FM, Jenkins HE, Cohen T. Smear positivity in paediatric and adult tuberculosis: systematic review and meta-analysis BMC Infectious Diseases 2016, 16: 282. PMID: 27296716, PMCID: PMC4906576, DOI: 10.1186/s12879-016-1617-9.
- Rapid Drug Susceptibility Testing of Drug-Resistant Mycobacterium tuberculosis Isolates Directly from Clinical Samples by Use of Amplicon Sequencing: a Proof-of-Concept StudyColman RE, Anderson J, Lemmer D, Lehmkuhl E, Georghiou SB, Heaton H, Wiggins K, Gillece JD, Schupp JM, Catanzaro DG, Crudu V, Cohen T, Rodwell TC, Engelthaler DM. Rapid Drug Susceptibility Testing of Drug-Resistant Mycobacterium tuberculosis Isolates Directly from Clinical Samples by Use of Amplicon Sequencing: a Proof-of-Concept Study Journal Of Clinical Microbiology 2016, 54: 2058-2067. PMID: 27225403, PMCID: PMC4963505, DOI: 10.1128/jcm.00535-16.
- Use of Lot Quality Assurance Sampling to Ascertain Levels of Drug Resistant Tuberculosis in Western KenyaJezmir J, Cohen T, Zignol M, Nyakan E, Hedt-Gauthier BL, Gardner A, Kamle L, Injera W, Carter EJ. Use of Lot Quality Assurance Sampling to Ascertain Levels of Drug Resistant Tuberculosis in Western Kenya PLOS ONE 2016, 11: e0154142. PMID: 27167381, PMCID: PMC4864281, DOI: 10.1371/journal.pone.0154142.
- Assessing Local Risk of Rifampicin-Resistant Tuberculosis in KwaZulu-Natal, South Africa Using Lot Quality Assurance SamplingHeidebrecht CL, Podewils LJ, Pym A, Mthiyane T, Cohen T. Assessing Local Risk of Rifampicin-Resistant Tuberculosis in KwaZulu-Natal, South Africa Using Lot Quality Assurance Sampling PLOS ONE 2016, 11: e0153143. PMID: 27050561, PMCID: PMC4822784, DOI: 10.1371/journal.pone.0153143.
- ClassTR: Classifying Within-Host Heterogeneity Based on Tandem Repeats with Application to Mycobacterium tuberculosis InfectionsChindelevitch L, Colijn C, Moodley P, Wilson D, Cohen T. ClassTR: Classifying Within-Host Heterogeneity Based on Tandem Repeats with Application to Mycobacterium tuberculosis Infections PLOS Computational Biology 2016, 12: e1004475. PMID: 26829497, PMCID: PMC4734664, DOI: 10.1371/journal.pcbi.1004475.
- The transmission of Mycobacterium tuberculosis in high burden settingsYates TA, Khan PY, Knight GM, Taylor JG, McHugh TD, Lipman M, White RG, Cohen T, Cobelens FG, Wood R, Moore DA, Abubakar I. The transmission of Mycobacterium tuberculosis in high burden settings The Lancet Infectious Diseases 2016, 16: 227-238. PMID: 26867464, DOI: 10.1016/s1473-3099(15)00499-5.
- Assessing the utility of Xpert® MTB/RIF as a screening tool for patients admitted to medical wards in South AfricaHeidebrecht CL, Podewils LJ, Pym AS, Cohen T, Mthiyane T, Wilson D. Assessing the utility of Xpert® MTB/RIF as a screening tool for patients admitted to medical wards in South Africa Scientific Reports 2016, 6: 19391. PMID: 26786396, PMCID: PMC4726405, DOI: 10.1038/srep19391.
- Within-Host Heterogeneity of Mycobacterium tuberculosis Infection Is Associated With Poor Early Treatment Response: A Prospective Cohort StudyCohen T, Chindelevitch L, Misra R, Kempner ME, Galea J, Moodley P, Wilson D. Within-Host Heterogeneity of Mycobacterium tuberculosis Infection Is Associated With Poor Early Treatment Response: A Prospective Cohort Study The Journal Of Infectious Diseases 2016, 213: 1796-1799. PMID: 26768249, PMCID: PMC4857469, DOI: 10.1093/infdis/jiw014.
- Whole-genome sequencing of Mycobacterium tuberculosis for rapid diagnostics and beyondColijn C, Cohen T. Whole-genome sequencing of Mycobacterium tuberculosis for rapid diagnostics and beyond The Lancet Respiratory Medicine 2015, 4: 6-8. PMID: 26669892, DOI: 10.1016/s2213-2600(15)00510-x.
- Counting children with tuberculosis: why numbers matterSeddon JA, Jenkins HE, Liu L, Cohen T, Black RE, Vos T, Becerra MC, Graham SM, Sismanidis C, Dodd PJ. Counting children with tuberculosis: why numbers matter The International Journal Of Tuberculosis And Lung Disease 2015, 19: 9-16. PMID: 26564535, PMCID: PMC4708268, DOI: 10.5588/ijtld.15.0471.
- Data for action: collection and use of local data to end tuberculosisTheron G, Jenkins HE, Cobelens F, Abubakar I, Khan AJ, Cohen T, Dowdy DW. Data for action: collection and use of local data to end tuberculosis The Lancet 2015, 386: 2324-2333. PMID: 26515676, PMCID: PMC4708262, DOI: 10.1016/s0140-6736(15)00321-9.
- Erratum to: ‘The potential impact of coinfection on antimicrobial chemotherapy and drug resistance’Birger RB, Kouyos RD, Cohen T, Griffiths EC, Huijben S, Mina MJ, Volkova V, Grenfell B, Metcalf CJE. Erratum to: ‘The potential impact of coinfection on antimicrobial chemotherapy and drug resistance’ Trends In Microbiology 2015, 23: 742. PMID: 29482745, DOI: 10.1016/j.tim.2015.09.001.
- The Distribution of Fitness Costs of Resistance-Conferring Mutations Is a Key Determinant for the Future Burden of Drug-Resistant Tuberculosis: A Model-Based AnalysisKnight GM, Colijn C, Shrestha S, Fofana M, Cobelens F, White RG, Dowdy DW, Cohen T. The Distribution of Fitness Costs of Resistance-Conferring Mutations Is a Key Determinant for the Future Burden of Drug-Resistant Tuberculosis: A Model-Based Analysis Clinical Infectious Diseases 2015, 61: s147-s154. PMID: 26409276, PMCID: PMC4583567, DOI: 10.1093/cid/civ579.
- Identifying Hotspots of Multidrug-Resistant Tuberculosis Transmission Using Spatial and Molecular Genetic DataZelner JL, Murray MB, Becerra MC, Galea J, Lecca L, Calderon R, Yataco R, Contreras C, Zhang Z, Manjourides J, Grenfell BT, Cohen T. Identifying Hotspots of Multidrug-Resistant Tuberculosis Transmission Using Spatial and Molecular Genetic Data The Journal Of Infectious Diseases 2015, 213: 287-294. PMID: 26175455, PMCID: PMC4690150, DOI: 10.1093/infdis/jiv387.
- HIV burden in men who have sex with men: a prospective cohort study 2007–2012Jia Z, Huang X, Wu H, Zhang T, Li N, Ding P, Sun Y, Liu Z, Wei F, Zhang H, Jiao Y, Ji Y, Zhang Y, Guo C, Li W, Mou D, Xia W, Li Z, Chen D, Yan H, Chen X, Zhao J, Meyers K, Cohen T, Mayer K, Salomon JA, Lu Z, Dye C. HIV burden in men who have sex with men: a prospective cohort study 2007–2012 Scientific Reports 2015, 5: 11205. PMID: 26135810, PMCID: PMC5393284, DOI: 10.1038/srep11205.
- Fitness Costs of Drug Resistance Mutations in Multidrug-Resistant Mycobacterium tuberculosis: A Household-Based Case-Control StudySalvatore PP, Becerra MC, Wiesch P, Hinkley T, Kaur D, Sloutsky A, Cohen T. Fitness Costs of Drug Resistance Mutations in Multidrug-Resistant Mycobacterium tuberculosis: A Household-Based Case-Control Study The Journal Of Infectious Diseases 2015, 213: 149-155. PMID: 26092854, PMCID: PMC4676541, DOI: 10.1093/infdis/jiv347.
- How could preventive therapy affect the prevalence of drug resistance? Causes and consequencesKunkel A, Colijn C, Lipsitch M, Cohen T. How could preventive therapy affect the prevalence of drug resistance? Causes and consequences Philosophical Transactions Of The Royal Society B Biological Sciences 2015, 370: 20140306. PMID: 25918446, PMCID: PMC4424438, DOI: 10.1098/rstb.2014.0306.
- The potential impact of coinfection on antimicrobial chemotherapy and drug resistanceBirger RB, Kouyos RD, Cohen T, Griffiths EC, Huijben S, Mina MJ, Volkova V, Grenfell B, Metcalf CJE. The potential impact of coinfection on antimicrobial chemotherapy and drug resistance Trends In Microbiology 2015, 23: 537-544. PMID: 26028590, PMCID: PMC4835347, DOI: 10.1016/j.tim.2015.05.002.
- Classic reaction kinetics can explain complex patterns of antibiotic actionAbel Zur Wiesch P, Abel S, Gkotzis S, Ocampo P, Engelstädter J, Hinkley T, Magnus C, Waldor MK, Udekwu K, Cohen T. Classic reaction kinetics can explain complex patterns of antibiotic action Science Translational Medicine 2015, 7: 287ra73. PMID: 25972005, PMCID: PMC4554720, DOI: 10.1126/scitranslmed.aaa8760.
- Evaluating the potential impact of enhancing HIV treatment and tuberculosis control programmes on the burden of tuberculosisChindelevitch L, Menzies NA, Pretorius C, Stover J, Salomon JA, Cohen T. Evaluating the potential impact of enhancing HIV treatment and tuberculosis control programmes on the burden of tuberculosis Journal Of The Royal Society Interface 2015, 12: 20150146. PMID: 25878131, PMCID: PMC4424692, DOI: 10.1098/rsif.2015.0146.
- The prospective evaluation of the TB strain typing service in England: a mixed methods studyMears J, Vynnycky E, Lord J, Borgdorff MW, Cohen T, Crisp D, Innes JA, Lilley M, Maguire H, McHugh TD, Woltmann G, Abubakar I, Sonnenberg P. The prospective evaluation of the TB strain typing service in England: a mixed methods study Thorax 2015, 71: thoraxjnl-2014-206480. PMID: 25882538, DOI: 10.1136/thoraxjnl-2014-206480.
- Origin and Proliferation of Multiple-Drug Resistance in Bacterial PathogensChang HH, Cohen T, Grad YH, Hanage WP, O'Brien TF, Lipsitch M. Origin and Proliferation of Multiple-Drug Resistance in Bacterial Pathogens Microbiology And Molecular Biology Reviews 2015, 79: 101-116. PMID: 25652543, PMCID: PMC4402963, DOI: 10.1128/mmbr.00039-14.
- Effect of study design and setting on tuberculosis clustering estimates using Mycobacterial Interspersed Repetitive Units-Variable Number Tandem Repeats (MIRU-VNTR): a systematic review.Mears J, Abubakar I, Cohen T, McHugh TD, Sonnenberg P. Effect of study design and setting on tuberculosis clustering estimates using Mycobacterial Interspersed Repetitive Units-Variable Number Tandem Repeats (MIRU-VNTR): a systematic review. BMJ Open 2015, 5: e005636. PMID: 25609667, PMCID: PMC4305070, DOI: 10.1136/bmjopen-2014-005636.
- How competition governs whether moderate or aggressive treatment minimizes antibiotic resistanceColijn C, Cohen T. How competition governs whether moderate or aggressive treatment minimizes antibiotic resistance ELife 2015, 4: e10559. PMID: 26393685, PMCID: PMC4641510, DOI: 10.7554/elife.10559.
- Effect of empirical treatment on outcomes of clinical trials of diagnostic assays for tuberculosisMenzies NA, Cohen T, Murray M, Salomon JA. Effect of empirical treatment on outcomes of clinical trials of diagnostic assays for tuberculosis The Lancet Infectious Diseases 2015, 15: 16-17. PMID: 25541164, DOI: 10.1016/s1473-3099(14)71026-6.
- Magnitude and sources of bias in the detection of mixed strain M. tuberculosis infectionPlazzotta G, Cohen T, Colijn C. Magnitude and sources of bias in the detection of mixed strain M. tuberculosis infection Journal Of Theoretical Biology 2014, 368: 67-73. PMID: 25553967, PMCID: PMC7011203, DOI: 10.1016/j.jtbi.2014.12.009.
- The Impact of Antiretroviral Therapy on Mortality in HIV Positive People during Tuberculosis Treatment: A Systematic Review and Meta-AnalysisOdone A, Amadasi S, White RG, Cohen T, Grant AD, Houben RM. The Impact of Antiretroviral Therapy on Mortality in HIV Positive People during Tuberculosis Treatment: A Systematic Review and Meta-Analysis PLOS ONE 2014, 9: e112017. PMID: 25391135, PMCID: PMC4229142, DOI: 10.1371/journal.pone.0112017.
- The path of least resistance: aggressive or moderate treatment?Kouyos RD, Metcalf CJ, Birger R, Klein EY, Wiesch P, Ankomah P, Arinaminpathy N, Bogich TL, Bonhoeffer S, Brower C, Chi-Johnston G, Cohen T, Day T, Greenhouse B, Huijben S, Metlay J, Mideo N, Pollitt LC, Read AF, Smith DL, Standley C, Wale N, Grenfell B. The path of least resistance: aggressive or moderate treatment? Proceedings Of The Royal Society B 2014, 281: 20140566. PMID: 25253451, PMCID: PMC4211439, DOI: 10.1098/rspb.2014.0566.
- Cigarette smoking among tuberculosis patients increases risk of transmission to child contactsHuang CC, Tchetgen ET, Becerra MC, Cohen T, Galea J, Calderon R, Yataco R, Contreras C, Zhang ZB, Lecca L, Murray M. Cigarette smoking among tuberculosis patients increases risk of transmission to child contacts The International Journal Of Tuberculosis And Lung Disease 2014, 18: 1285-1291. PMID: 25299859, DOI: 10.5588/ijtld.14.0309.
- Modeling of Novel Diagnostic Strategies for Active Tuberculosis – A Systematic Review: Current Practices and RecommendationsZwerling A, White RG, Vassall A, Cohen T, Dowdy DW, Houben RM. Modeling of Novel Diagnostic Strategies for Active Tuberculosis – A Systematic Review: Current Practices and Recommendations PLOS ONE 2014, 9: e110558. PMID: 25340701, PMCID: PMC4207742, DOI: 10.1371/journal.pone.0110558.
- On the spread and control of MDR-TB epidemics: An examination of trends in anti-tuberculosis drug resistance surveillance dataCohen T, Jenkins HE, Lu C, McLaughlin M, Floyd K, Zignol M. On the spread and control of MDR-TB epidemics: An examination of trends in anti-tuberculosis drug resistance surveillance data Drug Resistance Updates 2014, 17: 105-123. PMID: 25458783, PMCID: PMC4358299, DOI: 10.1016/j.drup.2014.10.001.
- Prospective evaluation of a complex public health intervention: lessons from an initial and follow-up cross-sectional survey of the tuberculosis strain typing service in EnglandMears J, Abubakar I, Crisp D, Maguire H, Innes JA, Lilley M, Lord J, Cohen T, Borgdorff MW, Vynnycky E, McHugh TD, Sonnenberg P. Prospective evaluation of a complex public health intervention: lessons from an initial and follow-up cross-sectional survey of the tuberculosis strain typing service in England BMC Public Health 2014, 14: 1023. PMID: 25273511, PMCID: PMC4194411, DOI: 10.1186/1471-2458-14-1023.
- Assessment of the patient, health system, and population effects of Xpert MTB/RIF and alternative diagnostics for tuberculosis in Tanzania: an integrated modelling approachLangley I, Lin HH, Egwaga S, Doulla B, Ku CC, Murray M, Cohen T, Squire SB. Assessment of the patient, health system, and population effects of Xpert MTB/RIF and alternative diagnostics for tuberculosis in Tanzania: an integrated modelling approach The Lancet Global Health 2014, 2: e581-e591. PMID: 25304634, DOI: 10.1016/s2214-109x(14)70291-8.
- The burden of tuberculosis disease in children–Authors' replyJenkins HE, Pagano M, Yuen CM, Becerra MC, Cohen T. The burden of tuberculosis disease in children–Authors' reply The Lancet 2014, 384: 1343-1344. PMID: 25307837, DOI: 10.1016/s0140-6736(14)61811-0.
- Age-Specific Risks of Tuberculosis Infection From Household and Community Exposures and Opportunities for Interventions in a High-Burden SettingZelner JL, Murray MB, Becerra MC, Galea J, Lecca L, Calderon R, Yataco R, Contreras C, Zhang Z, Grenfell BT, Cohen T. Age-Specific Risks of Tuberculosis Infection From Household and Community Exposures and Opportunities for Interventions in a High-Burden Setting American Journal Of Epidemiology 2014, 180: 853-861. PMID: 25190676, PMCID: PMC4188339, DOI: 10.1093/aje/kwu192.
- Impact and cost-effectiveness of current and future tuberculosis diagnostics: the contribution of modellingDowdy DW, Houben R, Cohen T, Pai M, Cobelens F, Vassall A, Menzies NA, Gomez GB, Langley I, Squire SB, White R, for the TB MAC meeting participants. Impact and cost-effectiveness of current and future tuberculosis diagnostics: the contribution of modelling The International Journal Of Tuberculosis And Lung Disease 2014, 18: 1012-1018. PMID: 25189546, PMCID: PMC4436823, DOI: 10.5588/ijtld.13.0851.
- Drivers and Trajectories of Resistance to New First-Line Drug Regimens for TuberculosisShrestha S, Knight GM, Fofana M, Cohen T, White RG, Cobelens F, Dowdy DW. Drivers and Trajectories of Resistance to New First-Line Drug Regimens for Tuberculosis Open Forum Infectious Diseases 2014, 1: ofu073. PMID: 25734143, PMCID: PMC4281792, DOI: 10.1093/ofid/ofu073.
- How can mathematical models advance tuberculosis control in high HIV prevalence settings?Houben RM, Dowdy DW, Vassall A, Cohen T, Nicol MP, Granich RM, Shea JE, Eckhoff P, Dye C, Kimerling ME, White RG, . How can mathematical models advance tuberculosis control in high HIV prevalence settings? The International Journal Of Tuberculosis And Lung Disease 2014, 18: 509-514. PMID: 24903784, PMCID: PMC4436821, DOI: 10.5588/ijtld.13.0773.
- Bacillus Calmette-Guérin and Isoniazid Preventive Therapy Protect Contacts of Patients with TuberculosisZelner JL, Murray MB, Becerra MC, Galea J, Lecca L, Calderon R, Yataco R, Contreras C, Zhang Z, Grenfell BT, Cohen T. Bacillus Calmette-Guérin and Isoniazid Preventive Therapy Protect Contacts of Patients with Tuberculosis American Journal Of Respiratory And Critical Care Medicine 2014, 189: 853-859. PMID: 24592878, PMCID: PMC4225829, DOI: 10.1164/rccm.201310-1896oc.
- Incidence of multidrug-resistant tuberculosis disease in children: systematic review and global estimatesJenkins HE, Tolman AW, Yuen CM, Parr JB, Keshavjee S, Pérez-Vélez CM, Pagano M, Becerra MC, Cohen T. Incidence of multidrug-resistant tuberculosis disease in children: systematic review and global estimates The Lancet 2014, 383: 1572-1579. PMID: 24671080, PMCID: PMC4094366, DOI: 10.1016/s0140-6736(14)60195-1.
- Geographical heterogeneity of multidrug-resistant tuberculosis in Georgia, January 2009 to June 2011.Jenkins HE, Gegia M, Furin J, Kalandadze I, Nanava U, Chakhaia T, Cohen T. Geographical heterogeneity of multidrug-resistant tuberculosis in Georgia, January 2009 to June 2011. Eurosurveillance 2014, 19 PMID: 24679722, PMCID: PMC4090679, DOI: 10.2807/1560-7917.es2014.19.11.20743.
- Strengthening the Reporting of Molecular Epidemiology for Infectious Diseases (STROME-ID): an extension of the STROBE statementField N, Cohen T, Struelens MJ, Palm D, Cookson B, Glynn JR, Gallo V, Ramsay M, Sonnenberg P, MacCannell D, Charlett A, Egger M, Green J, Vineis P, Abubakar I. Strengthening the Reporting of Molecular Epidemiology for Infectious Diseases (STROME-ID): an extension of the STROBE statement The Lancet Infectious Diseases 2014, 14: 341-352. PMID: 24631223, DOI: 10.1016/s1473-3099(13)70324-4.
- High Rates of Potentially Infectious Tuberculosis and Multidrug-Resistant Tuberculosis (MDR-TB) among Hospital Inpatients in KwaZulu Natal, South Africa Indicate Risk of Nosocomial TransmissionBantubani N, Kabera G, Connolly C, Rustomjee R, Reddy T, Cohen T, Pym AS. High Rates of Potentially Infectious Tuberculosis and Multidrug-Resistant Tuberculosis (MDR-TB) among Hospital Inpatients in KwaZulu Natal, South Africa Indicate Risk of Nosocomial Transmission PLOS ONE 2014, 9: e90868. PMID: 24625669, PMCID: PMC3953209, DOI: 10.1371/journal.pone.0090868.
- High risk and rapid appearance of multidrug resistance during tuberculosis treatment in Moldova.Jenkins HE, Crudu V, Soltan V, Ciobanu A, Domente L, Cohen T. High risk and rapid appearance of multidrug resistance during tuberculosis treatment in Moldova. European Respiratory Journal 2014, 43: 1132-41. PMID: 24558181, PMCID: PMC4005038, DOI: 10.1183/09031936.00203613.
- Changing Patterns of Spatial Clustering of Schistosomiasis in Southwest China between 1999–2001 and 2007–2008: Assessing Progress toward Eradication after the World Bank Loan ProjectHu Y, Xiong C, Zhang Z, Luo C, Cohen T, Gao J, Zhang L, Jiang Q. Changing Patterns of Spatial Clustering of Schistosomiasis in Southwest China between 1999–2001 and 2007–2008: Assessing Progress toward Eradication after the World Bank Loan Project International Journal Of Environmental Research And Public Health 2014, 11: 701-712. PMID: 24394217, PMCID: PMC3924469, DOI: 10.3390/ijerph110100701.
- The potential effects of changing HIV treatment policy on tuberculosis outcomes in South AfricaPretorius C, Menzies NA, Chindelevitch L, Cohen T, Cori A, Eaton JW, Fraser C, Gopalappa C, Hallett TB, Salomon JA, Stover J, White RG, Dodd PJ. The potential effects of changing HIV treatment policy on tuberculosis outcomes in South Africa AIDS 2014, 28: s25-s34. PMID: 24468944, DOI: 10.1097/qad.0000000000000085.
- The Effect of HIV-Related Immunosuppression on the Risk of Tuberculosis Transmission to Household ContactsHuang CC, Tchetgen ET, Becerra MC, Cohen T, Hughes KC, Zhang Z, Calderon R, Yataco R, Contreras C, Galea J, Lecca L, Murray M. The Effect of HIV-Related Immunosuppression on the Risk of Tuberculosis Transmission to Household Contacts Clinical Infectious Diseases 2013, 58: 765-774. PMID: 24368620, PMCID: PMC3935504, DOI: 10.1093/cid/cit948.
- Health benefits, costs, and cost-effectiveness of earlier eligibility for adult antiretroviral therapy and expanded treatment coverage: a combined analysis of 12 mathematical models.Eaton JW, Menzies NA, Stover J, Cambiano V, Chindelevitch L, Cori A, Hontelez JA, Humair S, Kerr CC, Klein DJ, Mishra S, Mitchell KM, Nichols BE, Vickerman P, Bakker R, Bärnighausen T, Bershteyn A, Bloom DE, Boily MC, Chang ST, Cohen T, Dodd PJ, Fraser C, Gopalappa C, Lundgren J, Martin NK, Mikkelsen E, Mountain E, Pham QD, Pickles M, Phillips A, Platt L, Pretorius C, Prudden HJ, Salomon JA, van de Vijver DA, de Vlas SJ, Wagner BG, White RG, Wilson DP, Zhang L, Blandford J, Meyer-Rath G, Remme M, Revill P, Sangrujee N, Terris-Prestholt F, Doherty M, Shaffer N, Easterbrook PJ, Hirnschall G, Hallett TB. Health benefits, costs, and cost-effectiveness of earlier eligibility for adult antiretroviral therapy and expanded treatment coverage: a combined analysis of 12 mathematical models. The Lancet. Global Health 2013, 2: 23-34. PMID: 25083415, PMCID: PMC4114402, DOI: 10.1016/S2214-109X(13)70172-4.
- Health benefits, costs, and cost-effectiveness of earlier eligibility for adult antiretroviral therapy and expanded treatment coverage: a combined analysis of 12 mathematical models.Eaton JW, Menzies NA, Stover J, Cambiano V, Chindelevitch L, Cori A, Hontelez JA, Humair S, Kerr CC, Klein DJ, Mishra S, Mitchell KM, Nichols BE, Vickerman P, Bakker R, Bärnighausen T, Bershteyn A, Bloom DE, Boily MC, Chang ST, Cohen T, Dodd PJ, Fraser C, Gopalappa C, Lundgren J, Martin NK, Mikkelsen E, Mountain E, Pham QD, Pickles M, Phillips A, Platt L, Pretorius C, Prudden HJ, Salomon JA, van de Vijver DA, de Vlas SJ, Wagner BG, White RG, Wilson DP, Zhang L, Blandford J, Meyer-Rath G, Remme M, Revill P, Sangrujee N, Terris-Prestholt F, Doherty M, Shaffer N, Easterbrook PJ, Hirnschall G, Hallett TB. Health benefits, costs, and cost-effectiveness of earlier eligibility for adult antiretroviral therapy and expanded treatment coverage: a combined analysis of 12 mathematical models. The Lancet Global Health 2013, 2: e23-34. PMID: 25104632, DOI: 10.1016/s2214-109x(13)70172-4.
- HIV burden in men who have sex with men: a prospective cohort study during 2007–12 in Beijing, ChinaJia Z, Huang X, Wu H, Li N, Li Q, Liu Z, Cohen T, Mayer K, Dye C, Salomon J. HIV burden in men who have sex with men: a prospective cohort study during 2007–12 in Beijing, China The Lancet 2013, 382: s19. DOI: 10.1016/s0140-6736(13)62267-9.
- Evaluation of the Tuberculosis Strain Typing Service (TB-STS) in EnglandMears J, Vynnycky E, Lord J, Borgdorff M, Cohen T, Abubakar I, Sonnenberg P, group O. Evaluation of the Tuberculosis Strain Typing Service (TB-STS) in England The Lancet 2013, 382: s73. DOI: 10.1016/s0140-6736(13)62498-8.
- Treatment outcome of multi-drug resistant tuberculosis in the United Kingdom: retrospective-prospective cohort study from 2004 to 2007.Anderson LF, Tamne S, Watson JP, Cohen T, Mitnick C, Brown T, Drobniewski F, Abubakar I. Treatment outcome of multi-drug resistant tuberculosis in the United Kingdom: retrospective-prospective cohort study from 2004 to 2007. Eurosurveillance 2013, 18 PMID: 24128699, DOI: 10.2807/1560-7917.es2013.18.40.20601.
- Response to Comment on “Community-Wide Isoniazid Preventive Therapy Drives Drug-Resistant Tuberculosis: A Model-Based Analysis”Mills HL, Cohen T, Colijn C. Response to Comment on “Community-Wide Isoniazid Preventive Therapy Drives Drug-Resistant Tuberculosis: A Model-Based Analysis” Science Translational Medicine 2013, 5: 204lr4. PMID: 24068734, DOI: 10.1126/scitranslmed.3007442.
- A tale of two settings: the role of the Beijing genotype in the epidemiology of multidrug-resistant tuberculosis.Stagg HR, Cohen T, Becerra MC, Anderson LF, Abubakar I. A tale of two settings: the role of the Beijing genotype in the epidemiology of multidrug-resistant tuberculosis. European Respiratory Journal 2013, 43: 632-5. PMID: 24036242, DOI: 10.1183/09031936.00140513.
- Data needs for evidence-based decisions: a tuberculosis modeler's ‘wish list’ [Review article]Dowdy DW, Dye C, Cohen T. Data needs for evidence-based decisions: a tuberculosis modeler's ‘wish list’ [Review article] The International Journal Of Tuberculosis And Lung Disease 2013, 17: 866-877. PMID: 23743307, PMCID: PMC4041555, DOI: 10.5588/ijtld.12.0573.
- How the Dynamics and Structure of Sexual Contact Networks Shape Pathogen PhylogeniesRobinson K, Fyson N, Cohen T, Fraser C, Colijn C. How the Dynamics and Structure of Sexual Contact Networks Shape Pathogen Phylogenies PLOS Computational Biology 2013, 9: e1003105. PMID: 23818840, PMCID: PMC3688487, DOI: 10.1371/journal.pcbi.1003105.
- Mycobacterium tuberculosis mutation rate estimates from different lineages predict substantial differences in the emergence of drug-resistant tuberculosisFord CB, Shah RR, Maeda MK, Gagneux S, Murray MB, Cohen T, Johnston JC, Gardy J, Lipsitch M, Fortune SM. Mycobacterium tuberculosis mutation rate estimates from different lineages predict substantial differences in the emergence of drug-resistant tuberculosis Nature Genetics 2013, 45: 784-790. PMID: 23749189, PMCID: PMC3777616, DOI: 10.1038/ng.2656.
- Identifying dynamic tuberculosis case-finding policies for HIV/TB coepidemicsYaesoubi R, Cohen T. Identifying dynamic tuberculosis case-finding policies for HIV/TB coepidemics Proceedings Of The National Academy Of Sciences Of The United States Of America 2013, 110: 9457-9462. PMID: 23690585, PMCID: PMC3677479, DOI: 10.1073/pnas.1218770110.
- Isoniazid-resistant Tuberculosis in ChildrenYuen CM, Tolman AW, Cohen T, Parr JB, Keshavjee S, Becerra MC. Isoniazid-resistant Tuberculosis in Children The Pediatric Infectious Disease Journal 2013, 32: e217-e226. PMID: 23348808, PMCID: PMC3709006, DOI: 10.1097/inf.0b013e3182865409.
- Community-Wide Isoniazid Preventive Therapy Drives Drug-Resistant Tuberculosis: A Model-Based AnalysisMills HL, Cohen T, Colijn C. Community-Wide Isoniazid Preventive Therapy Drives Drug-Resistant Tuberculosis: A Model-Based Analysis Science Translational Medicine 2013, 5: 180ra49. PMID: 23576815, PMCID: PMC3714172, DOI: 10.1126/scitranslmed.3005260.
- Planning for the invisible: projecting resources needed to identify and treat all patients with MDR-TB [Editorial]Mitnick CD, Keravec J, Cohen T. Planning for the invisible: projecting resources needed to identify and treat all patients with MDR-TB [Editorial] The International Journal Of Tuberculosis And Lung Disease 2013, 17: 427-428. PMID: 23485374, DOI: 10.5588/ijtld.13.0110.
- Bayesian Estimation of Mixture Models with Prespecified Elements to Compare Drug Resistance in Treatment-Naïve and Experienced Tuberculosis CasesIzu A, Cohen T, DeGruttola V. Bayesian Estimation of Mixture Models with Prespecified Elements to Compare Drug Resistance in Treatment-Naïve and Experienced Tuberculosis Cases PLOS Computational Biology 2013, 9: e1002973. PMID: 23555210, PMCID: PMC3605089, DOI: 10.1371/journal.pcbi.1002973.
- Disease Mapping with Spatially Uncertain DataManjourides J, Cohen T, Jeffery C, Pagano M. Disease Mapping with Spatially Uncertain Data Online Journal Of Public Health Informatics 2013, 5 PMCID: PMC3692831, DOI: 10.5210/ojphi.v5i1.4380.
- Risk factors and timing of default from treatment for non-multidrug-resistant tuberculosis in MoldovaJenkins HE, Ciobanu A, Plesca V, Crudu V, Galusca I, Soltan V, Cohen T. Risk factors and timing of default from treatment for non-multidrug-resistant tuberculosis in Moldova The International Journal Of Tuberculosis And Lung Disease 2013, 17: 373-380. PMID: 23407226, PMCID: PMC3710709, DOI: 10.5588/ijtld.12.0464.
- Population Health Impact and Cost-Effectiveness of Tuberculosis Diagnosis with Xpert MTB/RIF: A Dynamic Simulation and Economic EvaluationMenzies NA, Cohen T, Lin HH, Murray M, Salomon JA. Population Health Impact and Cost-Effectiveness of Tuberculosis Diagnosis with Xpert MTB/RIF: A Dynamic Simulation and Economic Evaluation PLOS Medicine 2012, 9: e1001347. PMID: 23185139, PMCID: PMC3502465, DOI: 10.1371/journal.pmed.1001347.
- Assessing spatial heterogeneity of multidrug-resistant tuberculosis in a high-burden countryJenkins HE, Plesca V, Ciobanu A, Crudu V, Galusca I, Soltan V, Serbulenco A, Zignol M, Dadu A, Dara M, Cohen T. Assessing spatial heterogeneity of multidrug-resistant tuberculosis in a high-burden country European Respiratory Journal 2012, 42: 1291-1301. PMID: 23100496, PMCID: PMC3800490, DOI: 10.1183/09031936.00111812.
- Mixed-Strain Mycobacterium tuberculosis Infections and the Implications for Tuberculosis Treatment and ControlCohen T, van Helden PD, Wilson D, Colijn C, McLaughlin MM, Abubakar I, Warren RM. Mixed-Strain Mycobacterium tuberculosis Infections and the Implications for Tuberculosis Treatment and Control Clinical Microbiology Reviews 2012, 25: 708-719. PMID: 23034327, PMCID: PMC3485752, DOI: 10.1128/cmr.00021-12.
- The impact of new tuberculosis diagnostics on transmission: why context mattersLin HH, Dowdy D, Dye C, Murray M, Cohen T. The impact of new tuberculosis diagnostics on transmission: why context matters Bulletin Of The World Health Organization 2012, 90: 739-747. PMID: 23109741, PMCID: PMC3471051, DOI: 10.2471/blt.11.101436.
- Re: Supporting health systems for tuberculosis through researchCohen T, Lin H, Shin S, Jeffery C, Contreras C, Santa Cruz J, Jave O, Yagui M, Asencios L, Pagano M, Manjourides J. Re: Supporting health systems for tuberculosis through research Tuberculosis 2012, 92: 290. DOI: 10.1016/j.tube.2012.04.001.
- Modeling the Dynamic Relationship Between HIV and the Risk of Drug-Resistant TuberculosisSergeev R, Colijn C, Murray M, Cohen T. Modeling the Dynamic Relationship Between HIV and the Risk of Drug-Resistant Tuberculosis Science Translational Medicine 2012, 4: 135ra67. PMID: 22623743, PMCID: PMC3387814, DOI: 10.1126/scitranslmed.3003815.
- Linking Surveillance with Action against Drug-Resistant TuberculosisCohen T, Manjourides J, Hedt-Gauthier B. Linking Surveillance with Action against Drug-Resistant Tuberculosis American Journal Of Respiratory And Critical Care Medicine 2012, 186: 399-401. PMID: 22592806, PMCID: PMC3443807, DOI: 10.1164/rccm.201203-0394pp.
- Use of Spatial Information to Predict Multidrug Resistance in Tuberculosis Patients, Peru - Volume 18, Number 5—May 2012 - Emerging Infectious Diseases journal - CDCLin HH, Shin SS, Contreras C, Asencios L, Paciorek CJ, Cohen T. Use of Spatial Information to Predict Multidrug Resistance in Tuberculosis Patients, Peru - Volume 18, Number 5—May 2012 - Emerging Infectious Diseases journal - CDC Emerging Infectious Diseases 2012, 18: 811-813. PMID: 22516236, PMCID: PMC3358052, DOI: 10.3201/eid1805.111467.
- Outcomes among tuberculosis patients with isoniazid resistance in Georgia, 2007-2009.Gegia M, Cohen T, Kalandadze I, Vashakidze L, Furin J. Outcomes among tuberculosis patients with isoniazid resistance in Georgia, 2007-2009. The International Journal Of Tuberculosis And Lung Disease 2012, 16: 812-6. PMID: 22507372, PMCID: PMC3786434, DOI: 10.5588/ijtld.11.0637.
- Controversies and Unresolved Issues in Tuberculosis Prevention and Control: A Low-Burden-Country PerspectiveAbubakar I, Stagg HR, Cohen T, Mangtani P, Rodrigues LC, Pimpin L, Watson JM, Squire SB, Zumla A. Controversies and Unresolved Issues in Tuberculosis Prevention and Control: A Low-Burden-Country Perspective The Journal Of Infectious Diseases 2012, 205: s293-s300. PMID: 22448025, DOI: 10.1093/infdis/jir886.
- Identifying multidrug resistant tuberculosis transmission hotspots using routinely collected dataManjourides J, Lin HH, Shin S, Jeffery C, Contreras C, Santa Cruz J, Jave O, Yagui M, Asencios L, Pagano M, Cohen T. Identifying multidrug resistant tuberculosis transmission hotspots using routinely collected data Tuberculosis 2012, 92: 273-279. PMID: 22401962, PMCID: PMC3323731, DOI: 10.1016/j.tube.2012.02.003.
- Multidrug Resistance Among New Tuberculosis CasesHedt BL, van Leth F, Zignol M, Cobelens F, van Gemert W, Nhung NV, Lyepshina S, Egwaga S, Cohen T. Multidrug Resistance Among New Tuberculosis Cases Epidemiology 2012, 23: 293-300. PMID: 22249242, PMCID: PMC3276714, DOI: 10.1097/ede.0b013e3182459455.
- Negative Control Exposures in Epidemiologic StudiesLipsitch M, Tchetgen E, Cohen T. Negative Control Exposures in Epidemiologic Studies Epidemiology 2012, 23: 351-352. DOI: 10.1097/ede.0b013e3182460c23.
- The dynamics of sexual contact networks: Effects on disease spread and controlRobinson K, Cohen T, Colijn C. The dynamics of sexual contact networks: Effects on disease spread and control Theoretical Population Biology 2012, 81: 89-96. PMID: 22248701, PMCID: PMC3328800, DOI: 10.1016/j.tpb.2011.12.009.
- Cumulative Incidence of Novel Influenza A/H1N1 in Foreign TravelersLipsitch M, Lajous M, O’Hagan J, Cohen T, Miller J, Goldstein E, Danon L, Wallinga J, Riley S, Dowell S, Reed C, McCarron M. Cumulative Incidence of Novel Influenza A/H1N1 in Foreign Travelers 2011, 28-36. DOI: 10.1201/b12232-5.
- Dynamic Health Policies for Controlling the Spread of Emerging Infections: Influenza as an ExampleYaesoubi R, Cohen T. Dynamic Health Policies for Controlling the Spread of Emerging Infections: Influenza as an Example PLOS ONE 2011, 6: e24043. PMID: 21915279, PMCID: PMC3167826, DOI: 10.1371/journal.pone.0024043.
- A modelling framework to support the selection and implementation of new tuberculosis diagnostic tools [State of the art series. Operational research. Number 8 in the series]Lin HH, Langley I, Mwenda R, Doulla B, Egwaga S, Millington KA, Mann GH, Murray M, Squire SB, Cohen T. A modelling framework to support the selection and implementation of new tuberculosis diagnostic tools [State of the art series. Operational research. Number 8 in the series] The International Journal Of Tuberculosis And Lung Disease 2011, 15: 996-1004. PMID: 21740663, DOI: 10.5588/ijtld.11.0062.
- Quantifying the Burden and Trends of Isoniazid Resistant Tuberculosis, 1994–2009Jenkins HE, Zignol M, Cohen T. Quantifying the Burden and Trends of Isoniazid Resistant Tuberculosis, 1994–2009 PLOS ONE 2011, 6: e22927. PMID: 21829557, PMCID: PMC3146514, DOI: 10.1371/journal.pone.0022927.
- Test and treat in HIV: success could depend on rapid detectionCohen T, Corbett EL. Test and treat in HIV: success could depend on rapid detection The Lancet 2011, 378: 204-206. PMID: 21684592, DOI: 10.1016/s0140-6736(11)60896-9.
- Generalized Markov models of infectious disease spread: A novel framework for developing dynamic health policiesYaesoubi R, Cohen T. Generalized Markov models of infectious disease spread: A novel framework for developing dynamic health policies European Journal Of Operational Research 2011, 215: 679-687. PMID: 21966083, PMCID: PMC3182455, DOI: 10.1016/j.ejor.2011.07.016.
- Bayesian methods for fitting mixture models that characterize branching tree processes: An application to development of resistant TB strainsIzu A, Cohen T, Mitnick C, Murray M, De Gruttola V. Bayesian methods for fitting mixture models that characterize branching tree processes: An application to development of resistant TB strains Statistics In Medicine 2011, 30: 2708-2720. PMID: 21717491, PMCID: PMC3219798, DOI: 10.1002/sim.4287.
- Multiple Introductions of Multidrug-Resistant Tuberculosis into Households, Lima, PeruCohen T, Murray M, Abubakar I, Zhang Z, Sloutsky A, Arteaga F, Chalco K, Franke MF, Becerra MC. Multiple Introductions of Multidrug-Resistant Tuberculosis into Households, Lima, Peru Emerging Infectious Diseases 2011, 17: 969-975. PMID: 21749756, PMCID: PMC3358204, DOI: 10.3201/eid1706.101471.
- Epidemiologic Inference From the Distribution of Tuberculosis Cases in Households in Lima, PeruBrooks-Pollock E, Becerra MC, Goldstein E, Cohen T, Murray MB. Epidemiologic Inference From the Distribution of Tuberculosis Cases in Households in Lima, Peru The Journal Of Infectious Diseases 2011, 203: 1582-1589. PMID: 21592987, PMCID: PMC3096792, DOI: 10.1093/infdis/jir162.
- Modelling the performance of isoniazid preventive therapy for reducing tuberculosis in HIV endemic settings: the effects of network structureMills HL, Cohen T, Colijn C. Modelling the performance of isoniazid preventive therapy for reducing tuberculosis in HIV endemic settings: the effects of network structure Journal Of The Royal Society Interface 2011, 8: 1510-1520. PMID: 21508012, PMCID: PMC3163428, DOI: 10.1098/rsif.2011.0160.
- Models to understand the population-level impact of mixed strain M. tuberculosis infectionsSergeev R, Colijn C, Cohen T. Models to understand the population-level impact of mixed strain M. tuberculosis infections Journal Of Theoretical Biology 2011, 280: 88-100. PMID: 21514304, PMCID: PMC3111980, DOI: 10.1016/j.jtbi.2011.04.011.
- Spontaneous Emergence of Multiple Drug Resistance in Tuberculosis before and during TherapyColijn C, Cohen T, Ganesh A, Murray M. Spontaneous Emergence of Multiple Drug Resistance in Tuberculosis before and during Therapy PLOS ONE 2011, 6: e18327. PMID: 21479171, PMCID: PMC3068161, DOI: 10.1371/journal.pone.0018327.
- Tuberculosis Among Participants in an Academic Global Health Medical Exchange ProgramGardner A, Cohen T, Carter EJ. Tuberculosis Among Participants in an Academic Global Health Medical Exchange Program Journal Of General Internal Medicine 2011, 26: 841-845. PMID: 21359579, PMCID: PMC3138970, DOI: 10.1007/s11606-011-1669-x.
- Drug Resistance Surveillance in Resource-Poor Settings: Current Methods and Considerations for TB, HIV, and MalariaHedt BL, Laufer MK, Cohen T. Drug Resistance Surveillance in Resource-Poor Settings: Current Methods and Considerations for TB, HIV, and Malaria American Journal Of Tropical Medicine And Hygiene 2011, 84: 192-199. PMID: 21292884, PMCID: PMC3029167, DOI: 10.4269/ajtmh.2011.10-0363.
- Diabetes mellitus and tuberculosis in countries with high tuberculosis burdens: individual risks and social determinantsGoldhaber-Fiebert JD, Jeon CY, Cohen T, Murray MB. Diabetes mellitus and tuberculosis in countries with high tuberculosis burdens: individual risks and social determinants International Journal Of Epidemiology 2011, 40: 417-428. PMID: 21252210, PMCID: PMC3621385, DOI: 10.1093/ije/dyq238.
- Assessing spatiotemporal patterns of multidrug-resistant and drug-sensitive tuberculosis in a South American settingLIN H, SHIN S, BLAYA JA, ZHANG Z, CEGIELSKI P, CONTRERAS C, ASENCIOS L, BONILLA C, BAYONA J, PACIOREK CJ, COHEN T. Assessing spatiotemporal patterns of multidrug-resistant and drug-sensitive tuberculosis in a South American setting Epidemiology And Infection 2010, 139: 1784-1793. PMID: 21205434, PMCID: PMC3153578, DOI: 10.1017/s0950268810002797.
- Mixed-Strain Mycobacterium tuberculosis Infections among Patients Dying in a Hospital in KwaZulu-Natal, South AfricaCohen T, Wilson D, Wallengren K, Samuel EY, Murray M. Mixed-Strain Mycobacterium tuberculosis Infections among Patients Dying in a Hospital in KwaZulu-Natal, South Africa Journal Of Clinical Microbiology 2010, 49: 385-388. PMID: 20980576, PMCID: PMC3020455, DOI: 10.1128/jcm.01378-10.
- Prolonged deferral of antiretroviral therapy in the SAPIT trial: Did we need a clinical trial to tell us that this would increase mortality?Boulle A, Clayden P, Cohen K, Cohen T, Conradie F, Dong K, Geffen N, Grimwood A, Hurtado R, Kenyon C, Lawn S, Maartens G, Meintjes G, Mendelson M, Murray M, Rangaka M, Sanne I, Spencer D, Taljaard J, Variava E, Venter WD, Wilson D. Prolonged deferral of antiretroviral therapy in the SAPIT trial: Did we need a clinical trial to tell us that this would increase mortality? South African Medical Journal 2010, 100: 566,568,570-571. PMID: 20822639, DOI: 10.7196/samj.4434.
- The Prevalence and Drug Sensitivity of Tuberculosis among Patients Dying in Hospital in KwaZulu-Natal, South Africa: A Postmortem StudyCohen T, Murray M, Wallengren K, Alvarez GG, Samuel EY, Wilson D. The Prevalence and Drug Sensitivity of Tuberculosis among Patients Dying in Hospital in KwaZulu-Natal, South Africa: A Postmortem Study PLOS Medicine 2010, 7: e1000296. PMID: 20582324, PMCID: PMC2889914, DOI: 10.1371/journal.pmed.1000296.
- Estimating the magnitude and direction of bias in tuberculosis drug resistance surveys conducted only in the public sector: a simulation studyCohen T, Hedt BL, Pagano M. Estimating the magnitude and direction of bias in tuberculosis drug resistance surveys conducted only in the public sector: a simulation study BMC Public Health 2010, 10: 355. PMID: 20565947, PMCID: PMC2898828, DOI: 10.1186/1471-2458-10-355.
- Negative ControlsLipsitch M, Tchetgen E, Cohen T. Negative Controls Epidemiology 2010, 21: 383-388. PMID: 20335814, PMCID: PMC3053408, DOI: 10.1097/ede.0b013e3181d61eeb.
- Development of Extensively Drug-resistant Tuberculosis during Multidrug-resistant Tuberculosis TreatmentShin SS, Keshavjee S, Gelmanova IY, Atwood S, Franke MF, Mishustin SP, Strelis AK, Andreev YG, Pasechnikov AD, Barnashov A, Tonkel TP, Cohen T. Development of Extensively Drug-resistant Tuberculosis during Multidrug-resistant Tuberculosis Treatment American Journal Of Respiratory And Critical Care Medicine 2010, 182: 426-432. PMID: 20413630, PMCID: PMC2921603, DOI: 10.1164/rccm.200911-1768oc.
- The Impact of Realistic Age Structure in Simple Models of Tuberculosis TransmissionBrooks-Pollock E, Cohen T, Murray M. The Impact of Realistic Age Structure in Simple Models of Tuberculosis Transmission PLOS ONE 2010, 5: e8479. PMID: 20062531, PMCID: PMC2797602, DOI: 10.1371/journal.pone.0008479.
- What is the mechanism for persistent coexistence of drug-susceptible and drug-resistant strains of Streptococcus pneumoniae?Colijn C, Cohen T, Fraser C, Hanage W, Goldstein E, Givon-Lavi N, Dagan R, Lipsitch M. What is the mechanism for persistent coexistence of drug-susceptible and drug-resistant strains of Streptococcus pneumoniae? Journal Of The Royal Society Interface 2009, 7: 905-919. PMID: 19940002, PMCID: PMC2871802, DOI: 10.1098/rsif.2009.0400.
- Extensively Drug‐Resistant Tuberculosis and HIV/AIDSMurray M, Cohen T. Extensively Drug‐Resistant Tuberculosis and HIV/AIDS 2009, 253-275. DOI: 10.1002/9783527627905.ch10.
- Use of Cumulative Incidence of Novel Influenza A/H1N1 in Foreign Travelers to Estimate Lower Bounds on Cumulative Incidence in MexicoLipsitch M, Lajous M, O'Hagan JJ, Cohen T, Miller JC, Goldstein E, Danon L, Wallinga J, Riley S, Dowell SF, Reed C, McCarron M. Use of Cumulative Incidence of Novel Influenza A/H1N1 in Foreign Travelers to Estimate Lower Bounds on Cumulative Incidence in Mexico PLOS ONE 2009, 4: e6895. PMID: 19742302, PMCID: PMC2731883, DOI: 10.1371/journal.pone.0006895.
- Mathematical models of the epidemiology and control of drug-resistant TBCohen T, Dye C, Colijn C, Williams B, Murray M. Mathematical models of the epidemiology and control of drug-resistant TB Expert Review Of Respiratory Medicine 2009, 3: 67-79. PMID: 20477283, DOI: 10.1586/17476348.3.1.67.
- Does Current Drug Resistance Surveillance Provide Useful Information in Tuberculosis?Cohen T, Colijn C, Wright A, Zignol M, Pym A, Murray M. Does Current Drug Resistance Surveillance Provide Useful Information in Tuberculosis? American Journal Of Respiratory And Critical Care Medicine 2009, 179: 82-83. DOI: 10.1164/ajrccm.179.1.82a.
- Personal digital assistants to collect tuberculosis bacteriology data in Peru reduce delays, errors, and workload, and are acceptable to users: cluster randomized controlled trialBlaya JA, Cohen T, Rodríguez P, Kim J, Fraser HS. Personal digital assistants to collect tuberculosis bacteriology data in Peru reduce delays, errors, and workload, and are acceptable to users: cluster randomized controlled trial International Journal Of Infectious Diseases 2008, 13: 410-418. PMID: 19097925, PMCID: PMC2673336, DOI: 10.1016/j.ijid.2008.09.015.
- Latent Coinfection and the Maintenance of Strain DiversityColijn C, Cohen T, Murray M. Latent Coinfection and the Maintenance of Strain Diversity Bulletin Of Mathematical Biology 2008, 71: 247. PMID: 19082663, PMCID: PMC2652765, DOI: 10.1007/s11538-008-9361-y.
- No coexistence for free: Neutral null models for multistrain pathogensLipsitch M, Colijn C, Cohen T, Hanage WP, Fraser C. No coexistence for free: Neutral null models for multistrain pathogens Epidemics 2008, 1: 2-13. PMID: 21352747, PMCID: PMC3099423, DOI: 10.1016/j.epidem.2008.07.001.
- Modeling the effects of strain diversity and mechanisms of strain competition on the potential performance of new tuberculosis vaccinesCohen T, Colijn C, Murray M. Modeling the effects of strain diversity and mechanisms of strain competition on the potential performance of new tuberculosis vaccines Proceedings Of The National Academy Of Sciences Of The United States Of America 2008, 105: 16302-16307. PMID: 18849476, PMCID: PMC2570977, DOI: 10.1073/pnas.0808746105.
- Effects of smoking and solid-fuel use on COPD, lung cancer, and tuberculosis in China: a time-based, multiple risk factor, modelling studyLin HH, Murray M, Cohen T, Colijn C, Ezzati M. Effects of smoking and solid-fuel use on COPD, lung cancer, and tuberculosis in China: a time-based, multiple risk factor, modelling study The Lancet 2008, 372: 1473-1483. PMID: 18835640, PMCID: PMC2652750, DOI: 10.1016/s0140-6736(08)61345-8.
- Too Little of a Good ThingCohen T, Lipsitch M. Too Little of a Good Thing Epidemiology 2008, 19: 588-589. PMID: 18552592, PMCID: PMC2652751, DOI: 10.1097/ede.0b013e31817734ba.
- Are Survey-Based Estimates of the Burden of Drug Resistant TB Too Low? Insight from a Simulation StudyCohen T, Colijn C, Finklea B, Wright A, Zignol M, Pym A, Murray M. Are Survey-Based Estimates of the Burden of Drug Resistant TB Too Low? Insight from a Simulation Study PLOS ONE 2008, 3: e2363. PMID: 18523659, PMCID: PMC2408555, DOI: 10.1371/journal.pone.0002363.
- Seasonality of Antibiotic-Resistant Streptococcus pneumoniae That Causes Acute Otitis Media: A Clue for an Antibiotic-Restriction Policy?Dagan R, Barkai G, Givon-Lavi N, Sharf AZ, Vardy D, Cohen T, Lipsitch M, Greenberg D. Seasonality of Antibiotic-Resistant Streptococcus pneumoniae That Causes Acute Otitis Media: A Clue for an Antibiotic-Restriction Policy? The Journal Of Infectious Diseases 2008, 197: 1094-1102. PMID: 18419528, PMCID: PMC2652754, DOI: 10.1086/528995.
- Challenges in Estimating the Total Burden of Drug-resistant TuberculosisCohen T, Colijn C, Wright A, Zignol M, Pym A, Murray M. Challenges in Estimating the Total Burden of Drug-resistant Tuberculosis American Journal Of Respiratory And Critical Care Medicine 2008, 177: 1302-1306. PMID: 18369201, PMCID: PMC2720088, DOI: 10.1164/rccm.200801-175pp.
- Mathematical Modeling of Tuberculosis Transmission DynamicsCohen T, Colijn C, Murray M. Mathematical Modeling of Tuberculosis Transmission Dynamics 2008, 227-243. DOI: 10.1002/9783527611614.ch44.
- MATHEMATICAL MODELS OF TUBERCULOSIS: ACCOMPLISHMENTS AND FUTURE CHALLENGESCOLIJN C, COHEN T, MURRAY M. MATHEMATICAL MODELS OF TUBERCULOSIS: ACCOMPLISHMENTS AND FUTURE CHALLENGES 2007, 123-148. DOI: 10.1142/9789812708779_0008.
- Emergent heterogeneity in declining tuberculosis epidemicsColijn C, Cohen T, Murray M. Emergent heterogeneity in declining tuberculosis epidemics Journal Of Theoretical Biology 2007, 247: 765-774. PMID: 17540410, PMCID: PMC2652758, DOI: 10.1016/j.jtbi.2007.04.015.
- Antiviral Resistance and the Control of Pandemic InfluenzaLipsitch M, Cohen T, Murray M, Levin BR. Antiviral Resistance and the Control of Pandemic Influenza PLOS Medicine 2007, 4: e15. PMID: 17253900, PMCID: PMC1779817, DOI: 10.1371/journal.pmed.0040015.
- Exogenous re-infection and the dynamics of tuberculosis epidemics: local effects in a network model of transmissionCohen T, Colijn C, Finklea B, Murray M. Exogenous re-infection and the dynamics of tuberculosis epidemics: local effects in a network model of transmission Journal Of The Royal Society Interface 2006, 4: 523-531. PMID: 17251134, PMCID: PMC2373405, DOI: 10.1098/rsif.2006.0193.
- Beneficial and perverse effects of isoniazid preventive therapy for latent tuberculosis infection in HIV–tuberculosis coinfected populationsCohen T, Lipsitch M, Walensky RP, Murray M. Beneficial and perverse effects of isoniazid preventive therapy for latent tuberculosis infection in HIV–tuberculosis coinfected populations Proceedings Of The National Academy Of Sciences Of The United States Of America 2006, 103: 7042-7047. PMID: 16632605, PMCID: PMC1459015, DOI: 10.1073/pnas.0600349103.
- Incident Tuberculosis among Recent US Immigrants and Exogenous Reinfection - Volume 11, Number 5—May 2005 - Emerging Infectious Diseases journal - CDCCohen T, Murray M. Incident Tuberculosis among Recent US Immigrants and Exogenous Reinfection - Volume 11, Number 5—May 2005 - Emerging Infectious Diseases journal - CDC Emerging Infectious Diseases 2005, 11: 725-728. PMID: 15890129, PMCID: PMC3320369, DOI: 10.3201/eid1105.041107.
- Isoniazid Resistance and the Future of Drug-Resistant TuberculosisCohen T, Becerra MC, Murray MB. Isoniazid Resistance and the Future of Drug-Resistant Tuberculosis Microbial Drug Resistance 2004, 10: 280-285. PMID: 15650371, PMCID: PMC2652757, DOI: 10.1089/mdr.2004.10.280.
- Modeling epidemics of multidrug-resistant M. tuberculosis of heterogeneous fitnessCohen T, Murray M. Modeling epidemics of multidrug-resistant M. tuberculosis of heterogeneous fitness Nature Medicine 2004, 10: 1117-1121. PMID: 15378056, PMCID: PMC2652755, DOI: 10.1038/nm1110.
- Transmission Dynamics and Control of Severe Acute Respiratory SyndromeLipsitch M, Cohen T, Cooper B, Robins JM, Ma S, James L, Gopalakrishna G, Chew SK, Tan CC, Samore MH, Fisman D, Murray M. Transmission Dynamics and Control of Severe Acute Respiratory Syndrome Science 2003, 300: 1966-1970. PMID: 12766207, PMCID: PMC2760158, DOI: 10.1126/science.1086616.
- The effect of drug resistance on the fitness of Mycobacterium tuberculosisCohen T, Sommers B, Murray M. The effect of drug resistance on the fitness of Mycobacterium tuberculosis The Lancet Infectious Diseases 2003, 3: 13-21. PMID: 12505028, DOI: 10.1016/s1473-3099(03)00483-3.