Public Health Modeling Publications

2024

Global patterns of rebound to normal RSV dynamics following COVID-19 suppressionThindwa D, Li K, Cooper-Wootton D, Zheng Z, Pitzer V, Weinberger D. Global patterns of rebound to normal RSV dynamics following COVID-19 suppression. BMC Infectious Diseases 2024, 24: 635. PMID: 38918718, PMCID: PMC11201371, DOI: 10.1186/s12879-024-09509-4.
Exploring the Big Data Paradox for various estimands using vaccination data from the global COVID-19 Trends and Impact Survey (CTIS)Yang Y, Dempsey W, Han P, Deshmukh Y, Richardson S, Tom B, Mukherjee B. Exploring the Big Data Paradox for various estimands using vaccination data from the global COVID-19 Trends and Impact Survey (CTIS). Science Advances 2024, 10: eadj0266. PMID: 38820165, DOI: 10.1126/sciadv.adj0266.
Sufficient COVID-19 quarantine and testing on international travelers to forestall cross-border transmission after China's removal of the zero-COVID policy in early 2023Bojja D, Zuo S, Townsend J. Sufficient COVID-19 quarantine and testing on international travelers to forestall cross-border transmission after China's removal of the zero-COVID policy in early 2023. International Journal Of Infectious Diseases 2024, 145: 107097. PMID: 38750721, DOI: 10.1016/j.ijid.2024.107097.
Air pollution changes due to COVID-19 lockdowns and attributable mortality changes in four countriesMa Y, Nobile F, Marb A, Dubrow R, Kinney P, Peters A, Stafoggia M, Breitner S, Chen K. Air pollution changes due to COVID-19 lockdowns and attributable mortality changes in four countries. Environment International 2024, 187: 108668. PMID: 38640613, DOI: 10.1016/j.envint.2024.108668.
Estimating the health effects of COVID-19-related immunisation disruptions in 112 countries during 2020–30: a modelling studyHartner A, Li X, Echeverria-Londono S, Roth J, Abbas K, Auzenbergs M, de Villiers M, Ferrari M, Fraser K, Fu H, Hallett T, Hinsley W, Jit M, Karachaliou A, Moore S, Nayagam S, Papadopoulos T, Perkins T, Portnoy A, Minh Q, Vynnycky E, Winter A, Burrows H, Chen C, Clapham H, Deshpande A, Hauryski S, Huber J, Jean K, Kim C, Kim J, Koh J, Lopman B, Pitzer V, Tam Y, Lambach P, Sim S, Woodruff K, Ferguson N, Trotter C, Gaythorpe K. Estimating the health effects of COVID-19-related immunisation disruptions in 112 countries during 2020–30: a modelling study. The Lancet Global Health 2024, 12: e563-e571. PMID: 38485425, PMCID: PMC10951961, DOI: 10.1016/s2214-109x(23)00603-4.
Comparing frequency of booster vaccination to prevent severe COVID-19 by risk group in the United StatesPark H, Gonsalves G, Tan S, Kelly J, Rutherford G, Wachter R, Schechter R, Paltiel A, Lo N. Comparing frequency of booster vaccination to prevent severe COVID-19 by risk group in the United States. Nature Communications 2024, 15: 1883. PMID: 38448400, PMCID: PMC10917753, DOI: 10.1038/s41467-024-45549-9.

2023

Comparative impact assessment of COVID-19 policy interventions in five South Asian countries using reported and estimated unreported death counts during 2020-2021Kundu R, Datta J, Ray D, Mishra S, Bhattacharyya R, Zimmermann L, Mukherjee B. Comparative impact assessment of COVID-19 policy interventions in five South Asian countries using reported and estimated unreported death counts during 2020-2021. PLOS Global Public Health 2023, 3: e0002063. PMID: 38150465, PMCID: PMC10752546, DOI: 10.1371/journal.pgph.0002063.
Design and analysis heterogeneity in observational studies of COVID-19 booster effectiveness: A review and case studyMeah S, Shi X, Fritsche L, Salvatore M, Wagner A, Martin E, Mukherjee B. Design and analysis heterogeneity in observational studies of COVID-19 booster effectiveness: A review and case study. Science Advances 2023, 9: eadj3747. PMID: 38117882, PMCID: PMC10732535, DOI: 10.1126/sciadv.adj3747.
Uncovering associations between pre-existing conditions and COVID-19 Severity: A polygenic risk score approach across three large biobanksFritsche L, Nam K, Du J, Kundu R, Salvatore M, Shi X, Lee S, Burgess S, Mukherjee B. Uncovering associations between pre-existing conditions and COVID-19 Severity: A polygenic risk score approach across three large biobanks. PLOS Genetics 2023, 19: e1010907. PMID: 38113267, PMCID: PMC10763941, DOI: 10.1371/journal.pgen.1010907.
Seasonality of endemic COVID-19Townsend J, Hassler H, Lamb A, Sah P, Nishio A, Nguyen C, Tew A, Galvani A, Dornburg A. Seasonality of endemic COVID-19. MBio 2023, 14: e01426-23. PMID: 37937979, PMCID: PMC10746271, DOI: 10.1128/mbio.01426-23.
Environmental surveillance for COVID-19 using SARS-CoV-2 RNA concentration in wastewater – a study in District East, Karachi, PakistanAnsari N, Kabir F, Khan W, Khalid F, Malik A, Warren J, Mehmood U, Kazi A, Yildirim I, Tanner W, Kalimuddin H, Kanwar S, Aziz F, Memon A, Alam M, Ikram A, Meschke J, Jehan F, Omer S, Nisar M. Environmental surveillance for COVID-19 using SARS-CoV-2 RNA concentration in wastewater – a study in District East, Karachi, Pakistan. The Lancet Regional Health - Southeast Asia 2023, 20: 100299. PMID: 38234701, PMCID: PMC10794106, DOI: 10.1016/j.lansea.2023.100299.
Excess mortality in US Veterans during the COVID-19 pandemic: an individual-level cohort studyWeinberger D, Bhaskaran K, Korves C, Lucas B, Columbo J, Vashi A, Davies L, Justice A, Rentsch C. Excess mortality in US Veterans during the COVID-19 pandemic: an individual-level cohort study. International Journal Of Epidemiology 2023, 52: 1725-1734. PMID: 37802889, PMCID: PMC10749763, DOI: 10.1093/ije/dyad136.
Mass gatherings for political expression had no discernible association with the local course of the COVID-19 pandemic in the USA in 2020 and 2021Feltham E, Forastiere L, Alexander M, Christakis N. Mass gatherings for political expression had no discernible association with the local course of the COVID-19 pandemic in the USA in 2020 and 2021. Nature Human Behaviour 2023, 7: 1708-1728. PMID: 37524931, DOI: 10.1038/s41562-023-01654-1.
Open data for COVID-19 policy analysis and mappingKatz R, Toole K, Robertson H, Case A, Kerr J, Robinson-Marshall S, Schermerhorn J, Orsborn S, Van Maele M, Zimmerman R, Stevens T, Phelan A, Carlson C, Graeden E. Open data for COVID-19 policy analysis and mapping. Scientific Data 2023, 10: 491. PMID: 37500627, PMCID: PMC10374886, DOI: 10.1038/s41597-023-02398-3.
COVID-19 annual update: a narrative reviewBiancolella M, Colona V, Luzzatto L, Watt J, Mattiuz G, Conticello S, Kaminski N, Mehrian-Shai R, Ko A, Gonsalves G, Vasiliou V, Novelli G, Reichardt J. COVID-19 annual update: a narrative review. Human Genomics 2023, 17: 68. PMID: 37488607, PMCID: PMC10367267, DOI: 10.1186/s40246-023-00515-2.
Year-Round Respiratory Syncytial Virus Transmission in The Netherlands Following the COVID-19 Pandemic: A Prospective Nationwide Observational and Modeling StudyLöwensteyn Y, Zheng Z, Rave N, Bannier M, Billard M, Casalegno J, Pitzer V, Wildenbeest J, Weinberger D, Bont L, Putten M, Smit-Kleinlugtenbeld E, Peetsold M, van der Kuip M, van Goudoever H, van Keulen B, Boot A, Kloos R, van Gool S, Snepvangers Y, Kuijpers A, Menelik N, de Crom S, Miedema C, Tusscher G, van Giessen J, de Moor R, Faber M, Breukels M, Jaddoe V, Duijts L, Lutterman C, Vink I, Tramper-Stranders G, Oudshoorn A, Ritman A, Dubbink-Verheij G, Bolt J, Cakir C, Rietveld E, Bekhof J, Rings E, de Swart J, Driessen G, Doedens R, Nijssen L, van Onzenoort-Bokken L, Meijneke R, van Scherpenzeel M, Faber T, de Groof F, Schouten S, van de Zande J, de Coul M, Henriet S, Stol K, van Rossem M, Jacobs M, van Houten M, Zuurbier R, Plötz F, de Vries A, van der Heide R, van Boekholt A, de Jong G, Rashid A, Roelofs M, Illy K, Reijmerink N, van Dorth S, Schipper S, Rosias P, Teirlinck A. Year-Round Respiratory Syncytial Virus Transmission in The Netherlands Following the COVID-19 Pandemic: A Prospective Nationwide Observational and Modeling Study. The Journal Of Infectious Diseases 2023, 228: 1394-1399. PMID: 37477906, PMCID: PMC10640768, DOI: 10.1093/infdis/jiad282.
COVID-19 Related Immunisation Disruptions from 2020-2030: Projecting Health Impact and Mitigation Strategies for 14 Pathogens Across 112 Low- and Middle-Income CountriesHartner A, Li X, Echeverria-Londono S, Roth J, Abbas K, Auzenbergs M, de Villiers M, Ferrari M, Fraser K, Fu H, Hallett T, Hinsley W, Jit M, Prasinou A, Moore S, Nayagam S, Papadopoulos T, Perkins T, Portnoy A, Tran Q, Vynnycky E, Winter A, Burrows H, Chen C, Clapham H, Deshpande A, Hauryski S, Huber J, Jean K, Kim C, Kim J, Koh J, Lopman B, Pitzer V, Tam Y, Lambach P, Sim S, Woodruff K, Ferguson N, Trotter C, Gaythorpe K. COVID-19 Related Immunisation Disruptions from 2020-2030: Projecting Health Impact and Mitigation Strategies for 14 Pathogens Across 112 Low- and Middle-Income Countries. 2023 DOI: 10.2139/ssrn.4492698.
Multi-omic longitudinal study reveals immune correlates of clinical course among hospitalized COVID-19 patientsDiray-Arce J, Fourati S, Jayavelu N, Patel R, Maguire C, Chang A, Dandekar R, Qi J, Lee B, van Zalm P, Schroeder A, Chen E, Konstorum A, Brito A, Gygi J, Kho A, Chen J, Pawar S, Gonzalez-Reiche A, Hoch A, Milliren C, Overton J, Westendorf K, Network I, Cairns C, Rouphael N, Bosinger S, Kim-Schulze S, Krammer F, Rosen L, Grubaugh N, van Bakel H, Wilson M, Rajan J, Steen H, Eckalbar W, Cotsapas C, Langelier C, Levy O, Altman M, Maecker H, Montgomery R, Haddad E, Sekaly R, Esserman D, Ozonoff A, Becker P, Augustine A, Guan L, Peters B, Kleinstein S. Multi-omic longitudinal study reveals immune correlates of clinical course among hospitalized COVID-19 patients. Cell Reports Medicine 2023, 101079. PMCID: PMC10203880, DOI: 10.1016/j.xcrm.2023.101079.
Multi-omic longitudinal study reveals immune correlates of clinical course among hospitalized COVID-19 patientsDiray-Arce J, Fourati S, Jayavelu N, Patel R, Maguire C, Chang A, Dandekar R, Qi J, Lee B, van Zalm P, Schroeder A, Chen E, Konstorum A, Brito A, Gygi J, Kho A, Chen J, Pawar S, Gonzalez-Reiche A, Hoch A, Milliren C, Overton J, Westendorf K, Network I, Abraham J, Adkisson M, Albert M, Torres L, Alvarenga B, Anderson M, Anderson E, Arnett A, Asashima H, Atkinson M, Baden L, Barton B, Beach K, Beagle E, Becker P, Bell M, Bernui M, Bime C, Kumar A, Booth L, Borresen B, Brakenridge S, Bristow L, Bryant R, Calfee C, Manuel J, Carrillo S, Chak S, Chang I, Connors J, Conway M, Corry D, Cowan D, Croen B, Dela Cruz C, Cusimano G, Eaker L, Edwards C, Ehrlich L, Elashoff D, Erickson H, Erle D, Farhadian S, Farrugia K, Fatou B, Fernandes A, Fernandez-Sesma A, Fragiadakis G, Furukawa S, Geltman J, Ghale R, Bermúdez M, Goonewardene M, Sanchez E, Guirgis F, Hafler D, Hamilton S, Harris P, Nemati A, Hendrickson C, Agudelo N, Hodder T, Holland S, Hough C, Huerta C, Hurley K, Hutton S, Iwasaki A, Jauregui A, Jha M, Johnson B, Joyner D, Kangelaris K, Kelly G, Khalil Z, Khan Z, Kheradmand F, Kim J, Kimura H, Ko A, Kohr B, Kraft M, Krummel M, Kutzler M, Lasky-Su J, Lee S, Lee D, Leipold M, Lentucci C, Leroux C, Lin E, Liu S, Love C, Lu Z, Maliskova L, Roth B, Manohar M, Martens M, McComsey G, McEnaney K, McLin R, Melamed E, Melnyk N, Mendez K, Messer W, Metcalf J, Michelotti G, Mick E, Mohanty S, Mosier J, Mulder L, Murphy M, Nadeau K, Nelson E, Nelson A, Nguyen V, Oberhaus J, Panganiban B, Pellegrini K, Pickering H, Powell D, Presnell S, Pulendran B, Rahman A, Sadeed A, Raskin A, Reed E, Pereira S, Rivera A, Rogers J, Rogers A, Rogowski B, Rooks R, Rosenberg-Hasson Y, Rothman J, Rousseau J, Salehi-Rad R, Saluvan M, Samaha H, Schaenman J, Schunk R, Semenza N, Sen S, Sevransky J, Seyfert-Margolis V, Shaheen T, Shaw A, Sieg S, Siegel S, Sigal N, Siles N, Simmons B, Simon V, Singh G, Sinko L, Smith C, Smolen K, Song L, Srivastava K, Sullivan P, Syphurs C, Tcheou J, Tegos G, Tharp G, Ally A, Tsitsiklis A, Ungaro R, Vaysman T, Viode A, Vita R, Wang X, Ward A, Ward D, Willmore A, Woloszczuk K, Wong K, Woodruff P, Xu L, van Haren S, van de Guchte A, Zhao Y, Cairns C, Rouphael N, Bosinger S, Kim-Schulze S, Krammer F, Rosen L, Grubaugh N, van Bakel H, Wilson M, Rajan J, Steen H, Eckalbar W, Cotsapas C, Langelier C, Levy O, Altman M, Maecker H, Montgomery R, Haddad E, Sekaly R, Esserman D, Ozonoff A, Becker P, Augustine A, Guan L, Peters B, Kleinstein S. Multi-omic longitudinal study reveals immune correlates of clinical course among hospitalized COVID-19 patients. Cell Reports Medicine 2023, 4: 101079. PMID: 37327781, PMCID: PMC10203880, DOI: 10.1016/j.xcrm.2023.101079.
Excess Mortality Among Patients in the Veterans Affairs Health System Compared With the Overall US Population During the First Year of the COVID-19 PandemicWeinberger D, Rose L, Rentsch C, Asch S, Columbo J, King J, Korves C, Lucas B, Taub C, Young-Xu Y, Vashi A, Davies L, Justice A. Excess Mortality Among Patients in the Veterans Affairs Health System Compared With the Overall US Population During the First Year of the COVID-19 Pandemic. JAMA Network Open 2023, 6: e2312140. PMID: 37155169, PMCID: PMC10167568, DOI: 10.1001/jamanetworkopen.2023.12140.
Application of Phylodynamic Tools to Inform the Public Health Response to COVID-19: Qualitative Analysis of Expert OpinionsRich S, Richards V, Mavian C, Magalis B, Grubaugh N, Rasmussen S, Dellicour S, Vrancken B, Carrington C, Fisk-Hoffman R, Danso-Odei D, Chacreton D, Shapiro J, Seraphin M, Hepp C, Black A, Dennis A, Trovão N, Vandamme A, Rasmussen A, Lauzardo M, Dean N, Salemi M, Prosperi M. Application of Phylodynamic Tools to Inform the Public Health Response to COVID-19: Qualitative Analysis of Expert Opinions. JMIR Formative Research 2023, 7: e39409. PMID: 36848460, PMCID: PMC10131930, DOI: 10.2196/39409.
Persistence of Pneumococcal Carriage among Older Adults in the Community despite COVID-19 Mitigation MeasuresWyllie A, Mbodj S, Thammavongsa D, Hislop M, Yolda-Carr D, Waghela P, Nakahata M, Stahlfeld A, Vega N, York A, Allicock O, Wilkins G, Ouyang A, Siqueiros L, Strong Y, Anastasio K, Alexander-Parrish R, Arguedas A, Gessner B, Weinberger D. Persistence of Pneumococcal Carriage among Older Adults in the Community despite COVID-19 Mitigation Measures. Microbiology Spectrum 2023, 11: e04879-22. PMID: 37036377, PMCID: PMC10269788, DOI: 10.1128/spectrum.04879-22.
Implementation of a Hardware-Assisted Bluetooth-Based COVID-19 Tracking Device in a High School: Mixed Methods StudyLi D, Shelby T, Brault M, Manohar R, Vermund S, Hagaman A, Forastiere L, Caruthers T, Egger E, Wang Y, Manohar N, Manohar P, Davis J, Zhou X. Implementation of a Hardware-Assisted Bluetooth-Based COVID-19 Tracking Device in a High School: Mixed Methods Study. JMIR Formative Research 2023, 7: e39765. PMID: 36525333, PMCID: PMC10131711, DOI: 10.2196/39765.
The COVID-19 pandemic as an opportunity for unravelling the causative association between respiratory viruses and pneumococcus-associated disease in young children: a prospective studyDagan R, van der Beek B, Ben-Shimol S, Greenberg D, Shemer-Avni Y, Weinberger D, Danino D. The COVID-19 pandemic as an opportunity for unravelling the causative association between respiratory viruses and pneumococcus-associated disease in young children: a prospective study. EBioMedicine 2023, 90: 104493. PMID: 36857965, PMCID: PMC9970381, DOI: 10.1016/j.ebiom.2023.104493.
Direct and indirect mortality impacts of the COVID-19 pandemic in the United States, March 1, 2020 to January 1, 2022Lee W, Park S, Weinberger D, Olson D, Simonsen L, Grenfell B, Viboud C. Direct and indirect mortality impacts of the COVID-19 pandemic in the United States, March 1, 2020 to January 1, 2022. ELife 2023, 12: e77562. PMID: 36811598, PMCID: PMC9946455, DOI: 10.7554/elife.77562.
Incorporating variant frequencies data into short-term forecasting for COVID-19 cases and deaths in the USA: a deep learning approachDu H, Dong E, Badr H, Petrone M, Grubaugh N, Gardner L. Incorporating variant frequencies data into short-term forecasting for COVID-19 cases and deaths in the USA: a deep learning approach. EBioMedicine 2023, 89: 104482. PMID: 36821889, PMCID: PMC9943054, DOI: 10.1016/j.ebiom.2023.104482.
Generating simple classification rules to predict local surges in COVID-19 hospitalizationsYaesoubi R, You S, Xi Q, Menzies N, Tuite A, Grad Y, Salomon J. Generating simple classification rules to predict local surges in COVID-19 hospitalizations. Health Care Management Science 2023, 26: 301-312. PMID: 36692583, PMCID: PMC9872755, DOI: 10.1007/s10729-023-09629-4.
COVID-19 outcomes by cancer status, site, treatment, and vaccinationSalvatore M, Hu M, Beesley L, Mondul A, Pearce C, Friese C, Fritsche L, Mukherjee B. COVID-19 outcomes by cancer status, site, treatment, and vaccination. Cancer Epidemiology Biomarkers & Prevention 2023, 32: 748-759. PMID: 36626383, DOI: 10.1158/1055-9965.epi-22-0607.

2022

2205. Potential Causative Association between Respiratory Viruses and Pneumococcus-Associated Disease in Young Children in Israel: Lessons from the COVID-19 PandemicDagan R, van der Beek B, Greenberg D, Avni Y, Ben-Shimol S, Weinberger D. 2205. Potential Causative Association between Respiratory Viruses and Pneumococcus-Associated Disease in Young Children in Israel: Lessons from the COVID-19 Pandemic. Open Forum Infectious Diseases 2022, 9: ofac492.1824. PMCID: PMC9752790, DOI: 10.1093/ofid/ofac492.1824.
Daily Rapid Antigen Exit Testing to Tailor University COVID-19 Isolation Policy - Volume 28, Number 12—December 2022 - Emerging Infectious Diseases journal - CDCEarnest R, Chen C, Chaguza C, Hahn A, Grubaugh N, Wilson M, . Daily Rapid Antigen Exit Testing to Tailor University COVID-19 Isolation Policy - Volume 28, Number 12—December 2022 - Emerging Infectious Diseases journal - CDC. Emerging Infectious Diseases 2022, 28: 2455-2462. PMID: 36417936, PMCID: PMC9707582, DOI: 10.3201/eid2812.220969.
Current Challenges With the Use of Test-Negative Designs for Modeling COVID-19 Vaccination and OutcomesShi X, Li K, Mukherjee B. Current Challenges With the Use of Test-Negative Designs for Modeling COVID-19 Vaccination and Outcomes. American Journal Of Epidemiology 2022, 192: 328-333. PMID: 36446573, PMCID: PMC10372864, DOI: 10.1093/aje/kwac203.
A Case-Crossover Phenome-wide association study (PheWAS) for understanding Post-COVID-19 diagnosis patternsHaupert S, Shi X, Chen C, Fritsche L, Mukherjee B. A Case-Crossover Phenome-wide association study (PheWAS) for understanding Post-COVID-19 diagnosis patterns. Journal Of Biomedical Informatics 2022, 136: 104237. PMID: 36283580, PMCID: PMC9595430, DOI: 10.1016/j.jbi.2022.104237.
Trends in non-COVID-19 hospitalizations prior to and during the COVID-19 pandemic period, United States, 2017–2021Cassell K, Zipfel CM, Bansal S, Weinberger DM. Trends in non-COVID-19 hospitalizations prior to and during the COVID-19 pandemic period, United States, 2017–2021. Nature Communications 2022, 13: 5930. PMID: 36209210, PMCID: PMC9546751, DOI: 10.1038/s41467-022-33686-y.
Estimating deaths averted and cost per life saved by scaling up mRNA COVID-19 vaccination in low-income and lower-middle-income countries in the COVID-19 Omicron variant era: a modelling studySavinkina A, Bilinski A, Fitzpatrick M, Paltiel AD, Rizvi Z, Salomon J, Thornhill T, Gonsalves G. Estimating deaths averted and cost per life saved by scaling up mRNA COVID-19 vaccination in low-income and lower-middle-income countries in the COVID-19 Omicron variant era: a modelling study. BMJ Open 2022, 12: e061752. PMID: 36100306, PMCID: PMC9471205, DOI: 10.1136/bmjopen-2022-061752.
Monkeypox, COVID-19, AIDS: have we progressed so little?Gonsalves G. Monkeypox, COVID-19, AIDS: have we progressed so little? Nature 2022, 609: 443-443. PMID: 36100678, DOI: 10.1038/d41586-022-02917-z.
Reconstructing the course of the COVID-19 epidemic over 2020 for US states and counties: Results of a Bayesian evidence synthesis modelChitwood MH, Russi M, Gunasekera K, Havumaki J, Klaassen F, Pitzer VE, Salomon JA, Swartwood NA, Warren JL, Weinberger DM, Cohen T, Menzies NA. Reconstructing the course of the COVID-19 epidemic over 2020 for US states and counties: Results of a Bayesian evidence synthesis model. PLOS Computational Biology 2022, 18: e1010465. PMID: 36040963, PMCID: PMC9467347, DOI: 10.1371/journal.pcbi.1010465.
Testing for COVID-19 is Much More Effective When Performed Immediately Prior to Social MixingWells CR, Gokcebel S, Pandey A, Galvani AP, Townsend JP. Testing for COVID-19 is Much More Effective When Performed Immediately Prior to Social Mixing. International Journal Of Public Health 2022, 67: 1604659. PMID: 35967267, PMCID: PMC9363582, DOI: 10.3389/ijph.2022.1604659.
Estimating COVID-19 Vaccination and Booster Effectiveness Using Electronic Health Records From an Academic Medical Center in MichiganRoberts E, Gu T, Wagner A, Mukherjee B, Fritsche L. Estimating COVID-19 Vaccination and Booster Effectiveness Using Electronic Health Records From an Academic Medical Center in Michigan. AJPM Focus 2022, 1: 100015. PMID: 36942016, PMCID: PMC9323299, DOI: 10.1016/j.focus.2022.100015.
Assessing the added value of linking electronic health records to improve the prediction of self-reported COVID-19 testing and diagnosisClark-Boucher D, Boss J, Salvatore M, Smith J, Fritsche L, Mukherjee B. Assessing the added value of linking electronic health records to improve the prediction of self-reported COVID-19 testing and diagnosis. PLOS ONE 2022, 17: e0269017. PMID: 35877617, PMCID: PMC9312965, DOI: 10.1371/journal.pone.0269017.
Comparative analyses of eighteen rapid antigen tests and RT-PCR for COVID-19 quarantine and surveillance-based isolationWells CR, Pandey A, Moghadas SM, Singer BH, Krieger G, Heron RJL, Turner DE, Abshire JP, Phillips KM, Michael Donoghue A, Galvani AP, Townsend JP. Comparative analyses of eighteen rapid antigen tests and RT-PCR for COVID-19 quarantine and surveillance-based isolation. Communications Medicine 2022, 2: 84. PMID: 35822105, PMCID: PMC9271059, DOI: 10.1038/s43856-022-00147-y.
Quarantine and serial testing for variants of SARS-CoV-2 with benefits of vaccination and boosting on consequent control of COVID-19Wells CR, Pandey A, Gokcebel S, Krieger G, Donoghue AM, Singer BH, Moghadas SM, Galvani AP, Townsend JP. Quarantine and serial testing for variants of SARS-CoV-2 with benefits of vaccination and boosting on consequent control of COVID-19. PNAS Nexus 2022, 1: pgac100. PMID: 35909795, PMCID: PMC9335027, DOI: 10.1093/pnasnexus/pgac100.
Public anxiety through various stages of COVID-19 coping: Evidence from ChinaWu Y, Zhang T, Ye Z, Chen K, Kuijp JV, Sun X, Han G, Zhao Y, Liu Y, Huang L. Public anxiety through various stages of COVID-19 coping: Evidence from China. PLOS ONE 2022, 17: e0270229. PMID: 35709292, PMCID: PMC9202924, DOI: 10.1371/journal.pone.0270229.
Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Outbreak at a College With High Coronavirus Disease 2019 (COVID-19) Vaccination Coverage—Connecticut, August 2021–September 2021Bart S, Curtiss CC, Earnest R, Lobe-Costonis R, Peterson H, McWilliams C, Billig K, Hadler JL, Grubaugh ND, Arcelus VJ, Sosa LE. Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Outbreak at a College With High Coronavirus Disease 2019 (COVID-19) Vaccination Coverage—Connecticut, August 2021–September 2021. Clinical Infectious Diseases 2022, 75: s243-s250. PMID: 35675696, PMCID: PMC9214140, DOI: 10.1093/cid/ciac422.
The Pneumococcus–Respiratory Virus Connection—Unexpected Lessons From the COVID-19 PandemicDagan R, Danino D, Weinberger DM. The Pneumococcus–Respiratory Virus Connection—Unexpected Lessons From the COVID-19 Pandemic. JAMA Network Open 2022, 5: e2218966. PMID: 35763301, DOI: 10.1001/jamanetworkopen.2022.18966.
Interventions to mitigate COVID-19 misinformation: protocol for a scoping reviewKumar N, Walter N, Nyhan K, Khoshnood K, Tucker JD, Bauch CT, Ding Q, Jones-Jang SM, De Choudhury M, Schwartz JL, Papakyriakopoulos O, Forastiere L. Interventions to mitigate COVID-19 misinformation: protocol for a scoping review. Systematic Reviews 2022, 11: 107. PMID: 35637514, PMCID: PMC9148843, DOI: 10.1186/s13643-022-01917-4.
Global Prevalence of Post-Coronavirus Disease 2019 (COVID-19) Condition or Long COVID: A Meta-Analysis and Systematic ReviewChen C, Haupert S, Zimmermann L, Shi X, Fritsche L, Mukherjee B. Global Prevalence of Post-Coronavirus Disease 2019 (COVID-19) Condition or Long COVID: A Meta-Analysis and Systematic Review. The Journal Of Infectious Diseases 2022, 226: 1593-1607. PMID: 35429399, PMCID: PMC9047189, DOI: 10.1093/infdis/jiac136.
End COVID-19 in low- and middle-income countriesMobarak AM, Miguel E, Abaluck J, Ahuja A, Alsan M, Banerjee A, Breza E, Chandrasekhar AG, Duflo E, Dzansi J, Garrett D, Goldsmith-Pinkham P, Gonsalves GS, Hossain MM, Jakubowski A, Kang G, Kharel A, Kremer M, Meriggi N, Nekesa C, Olken BA, Omer SB, Qadri F, Rees H, Salako B, Voors M, Warren S, Więcek W. End COVID-19 in low- and middle-income countries. Science 2022, 375: 1105-1110. PMID: 35271319, DOI: 10.1126/science.abo4089.
Assessment of Clinical Effectiveness of BNT162b2 COVID-19 Vaccine in US AdolescentsOliveira CR, Niccolai LM, Sheikha H, Elmansy L, Kalinich CC, Grubaugh ND, Shapiro ED, Billig K, Breban M, Brito A, Earnest R, Fauver J, Koch T, Ott I, Petrone M, Vogels C, Pham K, Tikhonova I, Castaldi C, Mane S, Bilguvar K, De Kumar B, Ferguson D, Kerantzas N, Landry M, Peaper D, Schulz W. Assessment of Clinical Effectiveness of BNT162b2 COVID-19 Vaccine in US Adolescents. JAMA Network Open 2022, 5: e220935. PMID: 35238933, PMCID: PMC8895259, DOI: 10.1001/jamanetworkopen.2022.0935.
Racial/Ethnic Segregation and Access to COVID-19 Testing: Spatial Distribution of COVID-19 Testing Sites in the Four Largest Highly Segregated Cities in the United StatesAsabor EN, Warren JL, Cohen T. Racial/Ethnic Segregation and Access to COVID-19 Testing: Spatial Distribution of COVID-19 Testing Sites in the Four Largest Highly Segregated Cities in the United States. American Journal Of Public Health 2022, 112: 518-526. PMID: 35196059, PMCID: PMC8887160, DOI: 10.2105/ajph.2021.306558.
Single-cell multi-omics reveals dyssynchrony of the innate and adaptive immune system in progressive COVID-19Unterman A, Sumida TS, Nouri N, Yan X, Zhao AY, Gasque V, Schupp JC, Asashima H, Liu Y, Cosme C, Deng W, Chen M, Raredon MSB, Hoehn KB, Wang G, Wang Z, DeIuliis G, Ravindra NG, Li N, Castaldi C, Wong P, Fournier J, Bermejo S, Sharma L, Casanovas-Massana A, Vogels CBF, Wyllie AL, Grubaugh ND, Melillo A, Meng H, Stein Y, Minasyan M, Mohanty S, Ruff WE, Cohen I, Raddassi K, Niklason L, Ko A, Montgomery R, Farhadian S, Iwasaki A, Shaw A, van Dijk D, Zhao H, Kleinstein S, Hafler D, Kaminski N, Dela Cruz C. Single-cell multi-omics reveals dyssynchrony of the innate and adaptive immune system in progressive COVID-19. Nature Communications 2022, 13: 440. PMID: 35064122, PMCID: PMC8782894, DOI: 10.1038/s41467-021-27716-4.
Quarantine and testing strategies to ameliorate transmission due to travel during the COVID-19 pandemic: a modelling studyWells CR, Pandey A, Fitzpatrick MC, Crystal WS, Singer BH, Moghadas SM, Galvani AP, Townsend JP. Quarantine and testing strategies to ameliorate transmission due to travel during the COVID-19 pandemic: a modelling study. The Lancet Regional Health - Europe 2022, 14: 100304. PMID: 35036981, PMCID: PMC8743228, DOI: 10.1016/j.lanepe.2021.100304.
Predicting daily COVID-19 case rates from SARS-CoV-2 RNA concentrations across a diversity of wastewater catchmentsZulli A, Pan A, Bart S, Crawford FW, Kaplan EH, Cartter M, Ko AI, Sanchez M, Brown C, Cozens D, Brackney DE, Peccia J. Predicting daily COVID-19 case rates from SARS-CoV-2 RNA concentrations across a diversity of wastewater catchments. FEMS Microbes 2022, 2: xtab022. PMID: 35128418, PMCID: PMC8807199, DOI: 10.1093/femsmc/xtab022.
Impact of close interpersonal contact on COVID-19 incidence: Evidence from 1 year of mobile device dataCrawford FW, Jones SA, Cartter M, Dean SG, Warren JL, Li ZR, Barbieri J, Campbell J, Kenney P, Valleau T, Morozova O. Impact of close interpersonal contact on COVID-19 incidence: Evidence from 1 year of mobile device data. Science Advances 2022, 8: eabi5499. PMID: 34995121, PMCID: PMC8741180, DOI: 10.1126/sciadv.abi5499.

2021

COVID-19 Outcomes and Genomic Characterization of SARS-CoV-2 Isolated From Veterans in New England States: Retrospective AnalysisLee M, Sallah YH, Petrone M, Ringer M, Cosentino D, Vogels CBF, Fauver JR, Alpert TD, Grubaugh ND, Gupta S. COVID-19 Outcomes and Genomic Characterization of SARS-CoV-2 Isolated From Veterans in New England States: Retrospective Analysis. JMIRx Med 2021, 2: e31503. PMID: 35014989, PMCID: PMC8722526, DOI: 10.2196/31503.
Authors' Response to Peer Reviews of “COVID-19 Outcomes and Genomic Characterization of SARS-CoV-2 Isolated From Veterans in New England States: Retrospective Analysis”Lee M, Sallah Y, Petrone M, Ringer M, Cosentino D, Vogels C, Fauver J, Alpert T, Grubaugh N, Gupta S. Authors' Response to Peer Reviews of “COVID-19 Outcomes and Genomic Characterization of SARS-CoV-2 Isolated From Veterans in New England States: Retrospective Analysis”. JMIRx Med 2021, 2: e35515. PMCID: PMC10414303, DOI: 10.2196/35515.
Decline in Pneumococcal Disease in Young Children During the Coronavirus Disease 2019 (COVID-19) Pandemic in Israel Associated With Suppression of Seasonal Respiratory Viruses, Despite Persistent Pneumococcal Carriage: A Prospective Cohort StudyDanino D, Ben-Shimol S, Van Der Beek BA, Givon-Lavi N, Avni YS, Greenberg D, Weinberger DM, Dagan R. Decline in Pneumococcal Disease in Young Children During the Coronavirus Disease 2019 (COVID-19) Pandemic in Israel Associated With Suppression of Seasonal Respiratory Viruses, Despite Persistent Pneumococcal Carriage: A Prospective Cohort Study. Clinical Infectious Diseases 2021, 75: e1154-e1164. PMID: 34904635, PMCID: PMC8754767, DOI: 10.1093/cid/ciab1014.
Unequal global vaccine coverage is at the heart of the current covid-19 crisisHassan F, London L, Gonsalves G. Unequal global vaccine coverage is at the heart of the current covid-19 crisis. The BMJ 2021, 375: n3074. PMID: 34903557, DOI: 10.1136/bmj.n3074.
Estimation of the Timing and Intensity of Reemergence of Respiratory Syncytial Virus Following the COVID-19 Pandemic in the USZheng Z, Pitzer VE, Shapiro ED, Bont LJ, Weinberger DM. Estimation of the Timing and Intensity of Reemergence of Respiratory Syncytial Virus Following the COVID-19 Pandemic in the US. JAMA Network Open 2021, 4: e2141779. PMID: 34913973, PMCID: PMC8678706, DOI: 10.1001/jamanetworkopen.2021.41779.
COVID-19 Testing and Case Rates and Social Contact Among Residential College Students in Connecticut During the 2020-2021 Academic YearSchultes O, Clarke V, Paltiel AD, Cartter M, Sosa L, Crawford FW. COVID-19 Testing and Case Rates and Social Contact Among Residential College Students in Connecticut During the 2020-2021 Academic Year. JAMA Network Open 2021, 4: e2140602. PMID: 34940864, PMCID: PMC8703252, DOI: 10.1001/jamanetworkopen.2021.40602.
Adventures in COVID-19 Policy Modeling: Education EditionGonsalves GS, Salomon JA, Thornhill T, Paltiel AD. Adventures in COVID-19 Policy Modeling: Education Edition. Current HIV/AIDS Reports 2021, 19: 94-100. PMID: 34826066, PMCID: PMC8617548, DOI: 10.1007/s11904-021-00592-9.
Discussion on “Regression Models for Understanding COVID-19 Epidemic Dynamics With Incomplete Data”Datta J, Mukherjee B. Discussion on “Regression Models for Understanding COVID-19 Epidemic Dynamics With Incomplete Data”. Journal Of The American Statistical Association 2021, 116: 1583-1586. DOI: 10.1080/01621459.2021.1982721.
Understanding the Patterns of Serological Testing for COVID-19 Pre- and Post-Vaccination Rollout in MichiganZhao Z, Salerno S, Shi X, Lee S, Mukherjee B, Fritsche L. Understanding the Patterns of Serological Testing for COVID-19 Pre- and Post-Vaccination Rollout in Michigan. Journal Of Clinical Medicine 2021, 10: 4341. PMID: 34640359, PMCID: PMC8509702, DOI: 10.3390/jcm10194341.
Reply to: A finding of sex similarities rather than differences in COVID-19 outcomesTakahashi T, Ellingson MK, Wong P, Israelow B, Lucas C, Klein J, Silva J, Mao T, Oh JE, Tokuyama M, Lu P, Venkataraman A, Park A, Liu F, Meir A, Sun J, Wang EY, Casanovas-Massana A, Wyllie AL, Vogels CBF, Earnest R, Lapidus S, Ott IM, Moore AJ, Shaw A, Fournier JB, Odio CD, Farhadian S, Dela Cruz C, Grubaugh ND, Schulz WL, Ring AM, Ko AI, Omer SB, Iwasaki A. Reply to: A finding of sex similarities rather than differences in COVID-19 outcomes. Nature 2021, 597: e10-e11. PMID: 34552250, DOI: 10.1038/s41586-021-03645-6.
COVID-19 vaccines: Keeping pace with SARS-CoV-2 variantsCevik M, Grubaugh ND, Iwasaki A, Openshaw P. COVID-19 vaccines: Keeping pace with SARS-CoV-2 variants. Cell 2021, 184: 5077-5081. PMID: 34534444, PMCID: PMC8445744, DOI: 10.1016/j.cell.2021.09.010.
Excess Deaths in Mexico City and New York City During the COVID-19 Pandemic, March to August 2020Lajous M, Huerta-Gutiérrez R, Kennedy J, Olson DR, Weinberger DM. Excess Deaths in Mexico City and New York City During the COVID-19 Pandemic, March to August 2020. American Journal Of Public Health 2021, 111: 1847-1850. PMID: 34499539, PMCID: PMC8561207, DOI: 10.2105/ajph.2021.306430.
Assessing COVID-19 Prevention Strategies to Permit the Safe Opening of Residential Colleges in Fall 2021Paltiel AD, Schwartz JL. Assessing COVID-19 Prevention Strategies to Permit the Safe Opening of Residential Colleges in Fall 2021. Annals Of Internal Medicine 2021, 174: m21-2965. PMID: 34461034, PMCID: PMC8422997, DOI: 10.7326/m21-2965.
Changes in COVID-19-related outcomes, potential risk factors and disparities over timeYu Y, Gu T, Valley T, Mukherjee B, Fritsche L. Changes in COVID-19-related outcomes, potential risk factors and disparities over time. Epidemiology And Infection 2021, 149: e192. PMCID: PMC8376857, DOI: 10.1017/s0950268821001898.
Relative risks of COVID-19 fatality between the first and second waves of the pandemic in Ontario, CanadaHsu SH, Chang SH, Gross C, Wang SY. Relative risks of COVID-19 fatality between the first and second waves of the pandemic in Ontario, Canada. International Journal Of Infectious Diseases 2021, 109: 189-191. PMID: 34216734, PMCID: PMC8245301, DOI: 10.1016/j.ijid.2021.06.059.
Comparison of Estimated Effectiveness of Case-Based and Population-Based Interventions on COVID-19 Containment in TaiwanNg TC, Cheng HY, Chang HH, Liu CC, Yang CC, Jian SW, Liu DP, Cohen T, Lin HH. Comparison of Estimated Effectiveness of Case-Based and Population-Based Interventions on COVID-19 Containment in Taiwan. JAMA Internal Medicine 2021, 181: 913-921. PMID: 33821922, PMCID: PMC8025126, DOI: 10.1001/jamainternmed.2021.1644.
Estimating COVID-19‒ Related Mortality in India: An Epidemiological Challenge With Insufficient DataZimmermann L, Salvatore M, Babu G, Mukherjee B. Estimating COVID-19‒ Related Mortality in India: An Epidemiological Challenge With Insufficient Data. American Journal Of Public Health 2021, 111: s59-s62. PMID: 34314196, PMCID: PMC8495647, DOI: 10.2105/ajph.2021.306419.
Evidence for SARS-CoV-2 Spike Protein in the Urine of COVID-19 PatientsGeorge S, Pal AC, Gagnon J, Timalsina S, Singh P, Vydyam P, Munshi M, Chiu JE, Renard I, Harden CA, Ott IM, Watkins AE, Vogels CBF, Lu P, Tokuyama M, Venkataraman A, Casanovas-Massana A, Wyllie AL, Rao V, Campbell M, Farhadian SF, Grubaugh ND, Dela Cruz CS, Ko AI, Perez A, Akaho EH, Moledina DG, Testani J, John AR, Ledizet M, Mamoun CB, Team A. Evidence for SARS-CoV-2 Spike Protein in the Urine of COVID-19 Patients. Kidney360 2021, 2: 924-936. PMID: 35373072, PMCID: PMC8791366, DOI: 10.34067/kid.0002172021.
Author Correction: Delayed production of neutralizing antibodies correlates with fatal COVID-19Lucas C, Klein J, Sundaram ME, Liu F, Wong P, Silva J, Mao T, Oh JE, Mohanty S, Huang J, Tokuyama M, Lu P, Venkataraman A, Park A, Israelow B, Vogels CBF, Muenker MC, Chang CH, Casanovas-Massana A, Moore AJ, Zell J, Fournier JB, Wyllie A, Campbell M, Lee A, Chun H, Grubaugh N, Schulz W, Farhadian S, Dela Cruz C, Ring A, Shaw A, Wisnewski A, Yildirim I, Ko A, Omer S, Iwasaki A. Author Correction: Delayed production of neutralizing antibodies correlates with fatal COVID-19. Nature Medicine 2021, 27: 1309-1309. PMID: 34145437, PMCID: PMC8212078, DOI: 10.1038/s41591-021-01416-4.
Introduction to the special issue: Management Science in the Fight Against Covid-19Morton A, Bish E, Megiddo I, Zhuang W, Aringhieri R, Brailsford S, Deo S, Geng N, Higle J, Hutton D, Janssen M, Kaplan EH, Li J, Oliveira MD, Prinja S, Rauner M, Silal S, Song J. Introduction to the special issue: Management Science in the Fight Against Covid-19. Health Care Management Science 2021, 24: 251-252. PMID: 34129134, PMCID: PMC8204067, DOI: 10.1007/s10729-021-09569-x.
COVID-19 Pandemic in India: Through the Lens of ModelingBabu G, Ray D, Bhaduri R, Halder A, Kundu R, Menon G, Mukherjee B. COVID-19 Pandemic in India: Through the Lens of Modeling. Global Health Science And Practice 2021, 9: 220-228. PMID: 34234020, PMCID: PMC8324184, DOI: 10.9745/ghsp-d-21-00233.
The impact of COVID-19 on TB: a review of the dataMcQuaid C, Vassall A, Cohen T, Fiekert K, COVID/TB Modelling Working Group *, White R. The impact of COVID-19 on TB: a review of the data. The International Journal Of Tuberculosis And Lung Disease 2021, 25: 436-446. PMID: 34049605, PMCID: PMC8171247, DOI: 10.5588/ijtld.21.0148.
Diverse functional autoantibodies in patients with COVID-19Wang EY, Mao T, Klein J, Dai Y, Huck JD, Jaycox JR, Liu F, Zhou T, Israelow B, Wong P, Coppi A, Lucas C, Silva J, Oh JE, Song E, Perotti ES, Zheng NS, Fischer S, Campbell M, Fournier JB, Wyllie AL, Vogels CBF, Ott IM, Kalinich CC, Petrone ME, Watkins AE, Dela Cruz C, Farhadian S, Schulz W, Ma S, Grubaugh N, Ko A, Iwasaki A, Ring A. Diverse functional autoantibodies in patients with COVID-19. Nature 2021, 595: 283-288. PMID: 34010947, DOI: 10.1038/s41586-021-03631-y.
The covid-19 vaccine patent waiver: a crucial step towards a “people’s vaccine”Gonsalves G, Yamey G. The covid-19 vaccine patent waiver: a crucial step towards a “people’s vaccine”. The BMJ 2021, 373: n1249. PMID: 34001498, DOI: 10.1136/bmj.n1249.
India's COVID-19 crisis: a call for international actionKuppalli K, Gala P, Cherabuddi K, Kalantri S, Mohanan M, Mukherjee B, Pinto L, Prakash M, Pramesh C, Rathi S, Pai N, Yamey G, Pai M. India's COVID-19 crisis: a call for international action. The Lancet 2021, 397: 2132-2135. PMID: 34000256, PMCID: PMC8120195, DOI: 10.1016/s0140-6736(21)01121-1.
COVID-19 one year into the pandemic: from genetics and genomics to therapy, vaccination, and policyNovelli G, Biancolella M, Mehrian-Shai R, Colona VL, Brito AF, Grubaugh ND, Vasiliou V, Luzzatto L, Reichardt JKV. COVID-19 one year into the pandemic: from genetics and genomics to therapy, vaccination, and policy. Human Genomics 2021, 15: 27. PMID: 33966626, PMCID: PMC8107019, DOI: 10.1186/s40246-021-00326-3.
Delayed production of neutralizing antibodies correlates with fatal COVID-19Lucas C, Klein J, Sundaram ME, Liu F, Wong P, Silva J, Mao T, Oh JE, Mohanty S, Huang J, Tokuyama M, Lu P, Venkataraman A, Park A, Israelow B, Vogels CBF, Muenker MC, Chang CH, Casanovas-Massana A, Moore AJ, Zell J, Fournier JB, Wyllie A, Campbell M, Lee A, Chun H, Grubaugh N, Schulz W, Farhadian S, Dela Cruz C, Ring A, Shaw A, Wisnewski A, Yildirim I, Ko A, Omer S, Iwasaki A. Delayed production of neutralizing antibodies correlates with fatal COVID-19. Nature Medicine 2021, 27: 1178-1186. PMID: 33953384, PMCID: PMC8785364, DOI: 10.1038/s41591-021-01355-0.
Divergent and self-reactive immune responses in the CNS of COVID-19 patients with neurological symptomsSong E, Bartley CM, Chow RD, Ngo TT, Jiang R, Zamecnik CR, Dandekar R, Loudermilk RP, Dai Y, Liu F, Sunshine S, Liu J, Wu W, Hawes IA, Alvarenga BD, Huynh T, McAlpine L, Rahman NT, Geng B, Chiarella J, Goldman-Israelow B, Vogels CBF, Grubaugh ND, Casanovas-Massana A, Phinney BS, Salemi M, Alexander JR, Gallego JA, Lencz T, Walsh H, Wapniarski AE, Mohanty S, Lucas C, Klein J, Mao T, Oh J, Ring A, Spudich S, Ko AI, Kleinstein SH, Pak J, DeRisi JL, Iwasaki A, Pleasure SJ, Wilson MR, Farhadian SF. Divergent and self-reactive immune responses in the CNS of COVID-19 patients with neurological symptoms. Cell Reports Medicine 2021, 2: 100288. PMID: 33969321, PMCID: PMC8091032, DOI: 10.1016/j.xcrm.2021.100288.
Diverse Functional Autoantibodies that Underlie Immune Perturbations in COVID-19Mao T, Wang E, Klein J, Dai Y, Huck J, Liu F, Zheng N, Zhou T, Goldman-Israelow B, Wong P, Lucas C, Silva J, Oh J, Song E, Perotti E, Fischer S, Campbell M, Fournier J, Wyllie A, Vogels C, Ott I, Kalinich C, Petrone M, Watkins A, Cruz C, Farhadian S, Schulz W, Grubaugh N, Ko A, Iwasaki A, Ring A. Diverse Functional Autoantibodies that Underlie Immune Perturbations in COVID-19. The Journal Of Immunology 2021, 206: 114.04-114.04. DOI: 10.4049/jimmunol.206.supp.114.04.
The Impact of Changes in Diagnostic Testing Practices on Estimates of COVID-19 Transmission in the United StatesPitzer VE, Chitwood M, Havumaki J, Menzies NA, Perniciaro S, Warren JL, Weinberger DM, Cohen T. The Impact of Changes in Diagnostic Testing Practices on Estimates of COVID-19 Transmission in the United States. American Journal Of Epidemiology 2021, 190: 1908-1917. PMID: 33831148, PMCID: PMC8083380, DOI: 10.1093/aje/kwab089.
Sexual health (excluding reproductive health, intimate partner violence and gender-based violence) and COVID-19: a scoping reviewKumar N, Janmohamed K, Nyhan K, Forastiere L, Zhang WH, Kågesten A, Uhlich M, Frimpong A, Van de Velde S, Francis JM, Erausquin JT, Larrson E, Callander D, Scott J, Minichiello V, Tucker J. Sexual health (excluding reproductive health, intimate partner violence and gender-based violence) and COVID-19: a scoping review. Sexually Transmitted Infections 2021, 97: 402-410. PMID: 33782145, PMCID: PMC8380886, DOI: 10.1136/sextrans-2020-054896.
A Phenome-Wide Association Study (PheWAS) of COVID-19 Outcomes by Race Using the Electronic Health Records Data in Michigan MedicineSalvatore M, Gu T, Mack J, Sankar S, Patil S, Valley T, Singh K, Nallamothu B, Kheterpal S, Lisabeth L, Fritsche L, Mukherjee B. A Phenome-Wide Association Study (PheWAS) of COVID-19 Outcomes by Race Using the Electronic Health Records Data in Michigan Medicine. Journal Of Clinical Medicine 2021, 10: 1351. PMID: 33805886, PMCID: PMC8037108, DOI: 10.3390/jcm10071351.
Abstract P91: Excess Cerebrovascular Mortality in the U.S. During the Covid-19 PandemicSharma R, Kuohn L, Weinberger D, Warren J, Sansing L, Jasne A, Falcone G, Dhand A, Sheth K. Abstract P91: Excess Cerebrovascular Mortality in the U.S. During the Covid-19 Pandemic. Stroke 2021, 52 DOI: 10.1161/str.52.suppl_1.p91.
Critical Care Nursing: A Key Constraint to COVID-19 Response and Healthcare Now and in the Future.Kurth A, Pinker E, Martinello RA, Honan L, Choi S, Beckman B. Critical Care Nursing: A Key Constraint to COVID-19 Response and Healthcare Now and in the Future. JONA The Journal Of Nursing Administration 2021, 51: e6-e12. PMID: 33570376, DOI: 10.1097/nna.0000000000000991.
Exposure and risk factors for COVID-19 and the impact of staying home on Michigan residentsWu K, Hornsby W, Klunder B, Krause A, Driscoll A, Kulka J, Bickett-Hickok R, Fellows A, Graham S, Kaleba E, Hayek S, Shi X, Sutton N, Douville N, Mukherjee B, Jamerson K, Brummett C, Willer C. Exposure and risk factors for COVID-19 and the impact of staying home on Michigan residents. PLOS ONE 2021, 16: e0246447. PMID: 33556117, PMCID: PMC7870003, DOI: 10.1371/journal.pone.0246447.
Adaptive Policies to Balance Health Benefits and Economic Costs of Physical Distancing Interventions during the COVID-19 PandemicYaesoubi R, Havumaki J, Chitwood MH, Menzies NA, Gonsalves G, Salomon JA, Paltiel AD, Cohen T. Adaptive Policies to Balance Health Benefits and Economic Costs of Physical Distancing Interventions during the COVID-19 Pandemic. Medical Decision Making 2021, 41: 386-392. PMID: 33504258, PMCID: PMC8084913, DOI: 10.1177/0272989x21990371.
Correction to: Eviction, Health Inequity, and the Spread of COVID-19: Housing Policy as a Primary Pandemic Mitigation StrategyBenfer EA, Vlahov D, Long MY, Walker-Wells E, Pottenger JL, Gonsalves G, Keene DE. Correction to: Eviction, Health Inequity, and the Spread of COVID-19: Housing Policy as a Primary Pandemic Mitigation Strategy. Journal Of Urban Health 2021, 98: 159-159. PMID: 33492558, PMCID: PMC7831690, DOI: 10.1007/s11524-021-00519-0.
Sexual health and COVID-19: protocol for a scoping reviewKumar N, Janmohamed K, Nyhan K, Forastiere L, Zhang WH, Kågesten A, Uhlich M, Van de Velde SM, Francis JM, Erausquin JT, Larsson EC, Callander D, Scott J, Minichiello V, Tucker JD. Sexual health and COVID-19: protocol for a scoping review. Systematic Reviews 2021, 10: 37. PMID: 33485393, PMCID: PMC7825389, DOI: 10.1186/s13643-021-01591-y.
Excess Cerebrovascular Mortality in the United States During the COVID-19 PandemicSharma R, Kuohn LR, Weinberger DM, Warren JL, Sansing LH, Jasne A, Falcone G, Dhand A, Sheth KN. Excess Cerebrovascular Mortality in the United States During the COVID-19 Pandemic. Stroke 2021, 52: 563-572. PMID: 33430638, PMCID: PMC7834664, DOI: 10.1161/strokeaha.120.031975.
Optimal COVID-19 quarantine and testing strategiesWells CR, Townsend JP, Pandey A, Moghadas SM, Krieger G, Singer B, McDonald RH, Fitzpatrick MC, Galvani AP. Optimal COVID-19 quarantine and testing strategies. Nature Communications 2021, 12: 356. PMID: 33414470, PMCID: PMC7788536, DOI: 10.1038/s41467-020-20742-8.
Eviction, Health Inequity, and the Spread of COVID-19: Housing Policy as a Primary Pandemic Mitigation StrategyBenfer EA, Vlahov D, Long MY, Walker-Wells E, Pottenger JL, Gonsalves G, Keene D. Eviction, Health Inequity, and the Spread of COVID-19: Housing Policy as a Primary Pandemic Mitigation Strategy. Journal Of Urban Health 2021, 98: 1-12. PMID: 33415697, PMCID: PMC7790520, DOI: 10.1007/s11524-020-00502-1.
Speed Versus Efficacy: Quantifying Potential Tradeoffs in COVID-19 Vaccine DeploymentPaltiel AD, Zheng A, Schwartz JL. Speed Versus Efficacy: Quantifying Potential Tradeoffs in COVID-19 Vaccine Deployment. Annals Of Internal Medicine 2021, 174: m20-7866. PMID: 33395345, PMCID: PMC7787166, DOI: 10.7326/m20-7866.
Continuity of TB services during the COVID-19 pandemic in ChinaShen X, Sha W, Yang C, Pan Q, Cohen T, Cheng S, Cai Q, Kan X, Zong P, Zeng Z, Tan S, Liang R, Bai L, Xia J, Wu S, Sun P, Wu G, Cai C, Wang X, Ai K, Liu J, Yuan Z. Continuity of TB services during the COVID-19 pandemic in China. The International Journal Of Tuberculosis And Lung Disease 2021, 25: 81-83. PMID: 33384053, DOI: 10.5588/ijtld.20.0632.
Multiple Transmission Chains within COVID-19 Cluster, Connecticut, USA, 2020 - Volume 27, Number 10—October 2021 - Emerging Infectious Diseases journal - CDCM. S, Flaherty E, Alpert T, Carlson S, Fasulo L, Earnest R, White EB, Dickens N, Brito AF, Grubaugh ND, Hadler JL, Sosa LE. Multiple Transmission Chains within COVID-19 Cluster, Connecticut, USA, 2020 - Volume 27, Number 10—October 2021 - Emerging Infectious Diseases journal - CDC. Emerging Infectious Diseases 2021, 27: 2669-2672. PMID: 34545794, PMCID: PMC8462310, DOI: 10.3201/eid2710.211196.
Discussion on “The timing and effectiveness of implementing mild interventions of COVID-19 in large industrial regions via a synthetic control method” by Tian et al.Ray D, Bhattacharyya R, Mukherjee B. Discussion on “The timing and effectiveness of implementing mild interventions of COVID-19 in large industrial regions via a synthetic control method” by Tian et al.. Statistics And Its Interface 2021, 14: 25-28. DOI: 10.4310/20-sii653.

2020

68. Active Monitoring of a Healthcare Worker Cohort During the COVID-19 EpidemicDatta R, Campbell M, Wyllie A, Casanovas-Massana A, Handoko R, Sewanan L, Naushad N, Simonov M, White E, Valdez J, Liu F, Omer S, Dela Cruz C, Farhadian S, Ring A, Iwasaki A, Grubaugh N, Martinello R, Ko A. 68. Active Monitoring of a Healthcare Worker Cohort During the COVID-19 Epidemic. Open Forum Infectious Diseases 2020, 7: s165-s165. PMCID: PMC7778054, DOI: 10.1093/ofid/ofaa439.378.
456. Implementing an At-Home Smell Test for Early Assessment of COVID-19 in High-Risk Healthcare WorkersWeiss J, Attuquayefio T, White E, Geng B, Handoko R, Herz R, White T, Iwasaki A, Grubaugh N, Datta R, Campbell M, Martinello R, Ko A, Small D, Farhadian S. 456. Implementing an At-Home Smell Test for Early Assessment of COVID-19 in High-Risk Healthcare Workers. Open Forum Infectious Diseases 2020, 7: s295-s296. PMCID: PMC7776583, DOI: 10.1093/ofid/ofaa439.649.

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