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Pathway analysis of proteomics or transcriptomics data: Part 2 Gene Set Enrichment Analysis (GSEA) Preranked (In-Person)

Name: Pathway analysis of proteomics or transcriptomics data: Part 2 Gene Set Enrichment Analysis (GSEA) Preranked (In-Person)
Start: 2023-04-06T14:00:00.0000000Z
End: 2023-04-06T16:00:00.0000000Z
Location: Sterling Hall of Medicine, L-Wing

Sterling Hall of Medicine, L-Wing

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Registration is required. Click here to register.

A simplified, faster-to-run version of GSEA.

If you are frustrated because after running a differential analysis, no individual gene meets the threshold for statistical significance, or you have a long list of differentially expressed genes without any unifying biological theme, then this workshop is for you. We will use a list of differentially expressed genes to run GSEA Preranked.

The goals of the session are:

To learn how to prepare your data and files for running GSEA Preranked
To learn about Molecular Signature Database (MSigDB).
To learn how to run GSEA Preranked analysis, the Leading-edge analysis, and results interpretation.
Send and visualize the results using the Enrichment Map app.
Understand the relevance of the results statistical vs biological.

Prerequisites:

Download and install the GSEA desktop version on your laptop.

Download and install Cytoscape software

A tutorial dataset will be made available to all registrants.