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Lee Kennedy-Shaffer, PhD

he/him/his
Assistant Professor of Biostatistics
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Education

PhD
Harvard University, Biostatistics (2020)


MA
Harvard University, Biostatistics


BS
Yale University, Mathematics


About

Titles

Assistant Professor of Biostatistics

Biography

Lee Kennedy-Shaffer is an Assistant Professor (Educator-Scholar Track) in Biostatistics. Lee received his PhD in Biostatistics under Dr. Michael Hughes in the Harvard T.H. Chan School of Public Health and conducted epidemiologic research there with Drs. Marc Lipsitch and Michael Mina in the Center for Communicable Disease Dynamics. He was an Assistant Professor in the Vassar College Department of Mathematics and Statistics from 2020–2024.

Lee's research focuses on methods and study designs to evaluate the effect of health policies, especially for infectious disease control, expanding causal inference tools for time-varying effects, and understanding the history and uses of statistics and how that should shape statistical education and communication. Project areas have ranged from using new sources of COVID-19 data to analyzing thoracic surgery outcomes to causal inference in baseball to the history of FDA's use of statistics to regulate drugs in the U.S.

Last Updated on March 22, 2026.

Appointments

Other Departments & Organizations

Education & Training

Postdoctoral Fellow
Harvard T.H. Chan School of Public Health
PhD
Harvard University, Biostatistics (2020)
MA
Harvard University, Biostatistics
BS
Yale University, Mathematics

Research

Overview

My research broadly focuses on the role of statistics and data science in answering questions about causality and time trends. In particular, I aim to develop study designs and analytic methods that can handle time-varying and location- or context-specific effects and that can give clear policy-relevant interpretations. Some specific areas of focus are:

Causal Inference Across Time and Space: How do we describe causal effects, like the impact of health policies, that vary over time and by location? How do we estimate these effects using both randomized and observational studies? What claims can we make and what claims can we not make? These questions drive both methodological research in cluster-randomized trials, stepped-wedge designs, and quasi-experimental (difference-in-differences and synthetic control) analyses and conceptual work on the role of statistics in society. This work has been published in journals such as the American Journal of Epidemiology, the American Journal of Public Health, Statistics in Medicine, and Clinical Trials.

Evaluating Infectious Disease Interventions: What makes infectious diseases different than other health outcomes? How does that shape our statistical methods and interpretations? These questions drive methodological work on study design, new uses of data streams from COVID-19 and beyond, and collaborative work with infectious disease surveillance teams. This work has been published in journals such as Science, Lancet Microbe, Epidemiology, the American Journal of Epidemiology, Vaccine, and the American Journal of Public Health.

Statistics History, Communication, and Education: How do social forces affect the development of statistics, and how does statistics in turn affect the development of science, policy, and society? Given this, how can we best communicate statistical ideas and results, teach statistical thinking, and train the next generation of scientific researchers, policy-makers, and communicators? These questions drive educational innovation and research and writing on new ways of teaching, new understandings of the history of statistics, and examples that can communicate key statistical ideas. This work has been published in journals such as the Journal of Statistics and Data Science, The American Statistician, the Food and Drug Law Journal, and Significance.

Collaborative Research: How should clustered data be handled in an observational study? How can a cluster-randomized trial best answer a research question? These questions from collaborators have driven the use of existing and new methodologies in fields such as nutrition, thoracic surgery, and lab studies of vectors of disease. This work has been published in journals such as the Annals of Thoracic Surgery, the Journal of Infectious Diseases, and the Journal of the Academy of Nutrition and Dietetics.

Medical Research Interests

Biostatistics; Communicable Diseases; Data Science; Drug Evaluation; Epidemiologic Methods; Models, Statistical; Regression Analysis; Vaccine-Preventable Diseases

Public Health Interests

Clinical Trials; Epidemiology Methods; COVID-19; Infectious Diseases; History of Medicine and Science; Randomized Trials

Research at a Glance

Research Interests

Research topics Lee Kennedy-Shaffer is interested in exploring.

Publications

Featured Publications

Academic Achievements & Community Involvement

Activities

  • activity

    Nature Medicine

  • activity

    Epidemiologic Methods

  • activity

    American Statistical Association, Committee of Representatives to AAAS

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    The statistical limits of the "Laboratories of Democracy"

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    Estimands, assumptions, and the challenges of evaluating policies: Lessons from staggered adoption

Honors

  • honor

    Conference Fellow

  • honor

    Reproducible Research Competition, Open-Track Methods Winner

  • honor

    Statistical Excellence in Early Career Writing

Get In Touch

Contacts

Academic Office Number

Locations

  • 300 George Street

    Academic Office

    Ste 501, Rm 529b

    New Haven, CT 06511