2016
Arabidopsis SAURs are critical for differential light regulation of the development of various organs
Sun N, Wang J, Gao Z, Dong J, He H, Terzaghi W, Wei N, Deng XW, Chen H. Arabidopsis SAURs are critical for differential light regulation of the development of various organs. Proceedings Of The National Academy Of Sciences Of The United States Of America 2016, 113: 6071-6076. PMID: 27118848, PMCID: PMC4889401, DOI: 10.1073/pnas.1604782113.Peer-Reviewed Original ResearchConceptsPhytochrome-interacting factorsAuxin levelsType 2C protein phosphatasesElongation of hypocotylsExpansion of cotyledonsSmall auxinArabidopsis seedlingsProtein phosphataseRNA genesHypocotyl elongationCotyledon expansionTranscriptomic analysisLight regulationDifferential regulationCell enlargementHypocotylsSAURPhosphatase activityCotyledonsDifferential growthGenesMutation analysisExpressionRegulationDeetiolation
2006
Bayesian error analysis model for reconstructing transcriptional regulatory networks
Sun N, Carroll RJ, Zhao H. Bayesian error analysis model for reconstructing transcriptional regulatory networks. Proceedings Of The National Academy Of Sciences Of The United States Of America 2006, 103: 7988-7993. PMID: 16702552, PMCID: PMC1472417, DOI: 10.1073/pnas.0600164103.Peer-Reviewed Original ResearchConceptsTranscriptional regulatory networksGene expression dataTranscription regulationRegulatory networksExpression dataProtein-DNA binding dataDNA sequence dataFundamental biological processesYeast cell cycleHigh-throughput technologiesMicroarray gene expression dataBiological experimentsSequence dataGenomic dataBiological processesCell cycleClear biological interpretationThroughput technologiesBiological interpretationMarkov chain Monte CarloBayesian hierarchical model frameworkBiochemical reactionsRegulationLinear system modelHierarchical model framework