2019
Machine Learning in Relation to Emergency Medicine Clinical and Operational Scenarios: An Overview
Lee S, Mohr N, Street W, Nadkarni P. Machine Learning in Relation to Emergency Medicine Clinical and Operational Scenarios: An Overview. Western Journal Of Emergency Medicine 2019, 20: 219-227. PMID: 30881539, PMCID: PMC6404711, DOI: 10.5811/westjem.2019.1.41244.Peer-Reviewed Original ResearchConceptsNatural language processingHealth informaticsMachine-learning algorithmsHealth informatics toolsArtificial intelligenceMachine learningLanguage processingVital technologyInformaticsInformatics toolsEmergency careOperational scenariosEmergency medicineCurrent stateHealthcare providersClinical useHealthcare settingsIntelligencePractice changeMachineAlgorithmToolEM cliniciansPowerful toolProminent development
2013
Natural language processing: algorithms and tools to extract computable information from EHRs and from the biomedical literature
Ohno-Machado L, Nadkarni P, Johnson K. Natural language processing: algorithms and tools to extract computable information from EHRs and from the biomedical literature. Journal Of The American Medical Informatics Association 2013, 20: 805-805. PMID: 23935077, PMCID: PMC3756279, DOI: 10.1136/amiajnl-2013-002214.Commentaries, Editorials and Letters
2006
Pivoting approaches for bulk extraction of Entity–Attribute–Value data
Dinu V, Nadkarni P, Brandt C. Pivoting approaches for bulk extraction of Entity–Attribute–Value data. Computer Methods And Programs In Biomedicine 2006, 82: 38-43. PMID: 16556470, DOI: 10.1016/j.cmpb.2006.02.001.Peer-Reviewed Original ResearchConceptsEntity attributesClinical study data management systemsData management systemNumber of attributesDatabase serverHash tableClinical patient dataValue dataManagement systemAlternative algorithmsPatient dataSQLServerRepositoryAlgorithmComplex approachFormatDataAttributesParameter formatOne-columnExtractionAnalytical programPerformanceMemory
2004
VitaPad: visualization tools for the analysis of pathway data
Holford M, Li N, Nadkarni P, Zhao H. VitaPad: visualization tools for the analysis of pathway data. Bioinformatics 2004, 21: 1596-1602. PMID: 15564306, DOI: 10.1093/bioinformatics/bti153.Peer-Reviewed Original ResearchConceptsCross-platform applicationHigh-resolution graphicsGraph layout algorithmsBiological pathway diagramsPathway diagramsXML formatUser interfaceLayout algorithmVisualization toolsIntuitive controlEasy extensionPathway dataGraphicsUsersMicroarray dataAlgorithmSoftwareToolFormatDataHongyuInterfaceIntegrationPackageApplications
2003
Temporal query of attribute-value patient data: utilizing the constraints of clinical studies
Deshpande AM, Brandt C, Nadkarni PM. Temporal query of attribute-value patient data: utilizing the constraints of clinical studies. International Journal Of Medical Informatics 2003, 70: 59-77. PMID: 12706183, PMCID: PMC2987270, DOI: 10.1016/s1386-5056(02)00183-1.Peer-Reviewed Original ResearchConceptsClinical study data management systemsTemporal queriesClinical patient record systemsClinical data storageData management systemPatient record systemQuery algorithmData storageTemporal operatorsClinical studiesQueriesManagement systemGroup of patientsRecord systemEffect of therapyTemporal computationAdverse eventsRelational formsPatient dataLogistic reasonsArchitectureValue modelAlgorithmCreating knowledgebases to text-mine PUBMED articles using clustering techniques.
Crasto CJ, Morse TM, Migliore M, Nadkarni P, Hines M, Brash DE, Miller PL, Shepherd GM. Creating knowledgebases to text-mine PUBMED articles using clustering techniques. AMIA Annual Symposium Proceedings 2003, 2003: 821. PMID: 14728326, PMCID: PMC1479923.Peer-Reviewed Original Research
1995
Management of Evolving Map Data: Data Structures and Algorithms Based on the Framework Map
Nadkarni P. Management of Evolving Map Data: Data Structures and Algorithms Based on the Framework Map. Genomics 1995, 30: 565-573. PMID: 8825644, DOI: 10.1006/geno.1995.1278.Peer-Reviewed Original ResearchConceptsData structureMap maintenanceClient-server databaseRelational databaseAmount of informationGenomic objectsAlgorithm BasedMap dataAlgorithmConsensus framework mapUseful mapsGenome CenterDatabaseObjectsQueriesMapsPutative orderBasedMapping effortsInformationFramework mapDataApplicationsOrderHeterogeneous methodologies
1992
Parallel Computation for Medicine and Biology: Applications of Linda At Yale University
Sittig D, Shifman M, Nadkarni P, Miller P. Parallel Computation for Medicine and Biology: Applications of Linda At Yale University. The International Journal Of High Performance Computing Applications 1992, 6: 147-163. DOI: 10.1177/109434209200600203.Peer-Reviewed Original Research
1991
Parallel computation and FASTA: confronting the problem of parallel database search for a fast sequence comparison algorithm
Miller P, Nadkarni P, Carriero N. Parallel computation and FASTA: confronting the problem of parallel database search for a fast sequence comparison algorithm. Bioinformatics 1991, 7: 71-78. PMID: 2004277, DOI: 10.1093/bioinformatics/7.1.71.Peer-Reviewed Original ResearchConceptsSequence comparison algorithmAmount of computationMachine-independent parallel programming languageComparison algorithmsDisk I/OParallel programming languageParallel program runsO bottleneck problemDifferent parallel machinesBiological sequence comparisonNumber of processorsTime-consuming computationProgramming languageParallelization strategyParallel computationParallel machinesProgram design strategiesProgram runBottleneck problemFASTA algorithmFASTAAlgorithmComputationBottleneckGeneral problem