2019
A multigene phylogeny toward a new phylogenetic classification of Leotiomycetes
Johnston PR, Quijada L, Smith CA, Baral HO, Hosoya T, Baschien C, Pärtel K, Zhuang WY, Haelewaters D, Park D, Carl S, López-Giráldez F, Wang Z, Townsend JP. A multigene phylogeny toward a new phylogenetic classification of Leotiomycetes. IMA Fungus 2019, 10: 1. PMID: 32647610, PMCID: PMC7325659, DOI: 10.1186/s43008-019-0002-x.Peer-Reviewed Original ResearchGeneric type speciesType speciesITS gene treeEx-type specimensRibosomal DNA markersHigher taxonomic levelsNew phylogenetic classificationNature of taxaAero-aquatic hyphomycetesEnvironmental DNA extractsMulti-gene studiesDNA sequencing studiesIdentification of specimensGene treesFormal taxonomic changesMultigene phylogenyMammalian pathogensPlant pathogensNovel taxaAsexual morphNew genomesTaxonomic levelsClass LeotiomycetesDNA markersPhylogenetic classification
2013
Phylogenetic and phylogenomic overview of the Polyporales
Binder M, Justo A, Riley R, Salamov A, Lopez-Giraldez F, Sjökvist E, Copeland A, Foster B, Sun H, Larsson E, Larsson KH, Townsend J, Grigoriev IV, Hibbett DS. Phylogenetic and phylogenomic overview of the Polyporales. Mycologia 2013, 105: 1350-1373. PMID: 23935031, DOI: 10.3852/13-003.Peer-Reviewed Original ResearchConceptsSingle-copy genePhylogenetic informativeness analysesResidual polyporoid cladeBayesian phylogenetic analysisPolyporales speciesMajor lineagesPhylogenomic datasetsAvailable genomesCorresponding cladesPhlebioid cladePolyporoid cladeNew genomesGenome dataPhylogenetic analysisSuprageneric taxonomyCertain taxaPhylogenetic systematicsGenomic datasetsIdentical topologiesPolyporalesGenomeCladeSupport valuesGenesLineages