2024
DNA methylation profiles of cancer-related fatigue associated with markers of inflammation and immunometabolism
Xiao C, Peng G, Conneely K, Zhao H, Felger J, Wommack E, Higgins K, Shin D, Saba N, Bruner D, Miller A. DNA methylation profiles of cancer-related fatigue associated with markers of inflammation and immunometabolism. Molecular Psychiatry 2024, 1-8. PMID: 38977918, DOI: 10.1038/s41380-024-02652-z.Peer-Reviewed Original ResearchGene expressionMethylation lociAssociated with gene expressionHead and neck cancerDNA methylation profilesProtein markersLipid metabolismInvolvement of genesIllumina MethylationEPICDNA methylationRelevant gene expressionEpigenetic modificationsExpression pairsInflammatory markersInflammatory responseLociHead and neck cancer patientsAssociated with inflammatory markersGenesDNAMarkers of inflammationAssociated with fatigueExpressionMethylationPost-radiotherapy
2018
DNA methylation signatures analysis with Illumina Infinitum MethylationEPIC and Infinium Human Methylation 450K BeadChip
Zhang X, Zhang X, Hu Y, Justice A, Li B, Wang Z, Zhao H, Krystal J, Xu K. DNA methylation signatures analysis with Illumina Infinitum MethylationEPIC and Infinium Human Methylation 450K BeadChip. Protocol Exchange 2018 DOI: 10.1038/protex.2018.080.Peer-Reviewed Original Research
2017
DNA methylation signatures analysis with Illumina Infinitum MethylationEPIC and Infinium Human Methylation 450K BeadChip
Zhang X, Zhang X, Hu Y, Justice A, Li B, Wang Z, Zhao H, Krystal J, Xu K. DNA methylation signatures analysis with Illumina Infinitum MethylationEPIC and Infinium Human Methylation 450K BeadChip. Protocol Exchange 2017 DOI: 10.1038/protex.2017.135.Peer-Reviewed Original ResearchDissecting Pathway Disturbances Using Network Topology and Multi-platform Genomics Data
Zhang Y, Linder M, Shojaie A, Ouyang Z, Shen R, Baggerly K, Baladandayuthapani V, Zhao H. Dissecting Pathway Disturbances Using Network Topology and Multi-platform Genomics Data. Statistics In Biosciences 2017, 10: 86-106. PMID: 37388623, PMCID: PMC10309155, DOI: 10.1007/s12561-017-9193-0.Peer-Reviewed Original ResearchMolecular regulatory elementsCopy number variantsRegulatory elementsMRNA moleculesPathway-based analysisBRAF pathwayCancer Genome Atlas (TCGA) projectMultiple tumor lineagesTumor-specific aberrationsRegulatory topologyRelevant copy number variantsDiverse cancer typesMultiple omicsGenomic dataMajor geneCancer typesGene expressionSingle-platform analysisOncogenic pathwaysNumber variantsMethylationComplex diseasesTumor lineageAtlas projectPathway