2022
Methods for large‐scale single mediator hypothesis testing: Possible choices and comparisons
Du J, Zhou X, Clark‐Boucher D, Hao W, Liu Y, Smith J, Mukherjee B. Methods for large‐scale single mediator hypothesis testing: Possible choices and comparisons. Genetic Epidemiology 2022, 47: 167-184. PMID: 36465006, PMCID: PMC10329872, DOI: 10.1002/gepi.22510.Peer-Reviewed Original ResearchConceptsNull hypothesisTest statisticsMediation hypothesis testingComposite null hypothesisHypothesis testingClasses of methodsFalse positive rateAlternative hypothesisSimulation studyHypothesis testing methodContinuous mediatorReference distributionSobel test statisticsContinuous outcomesExposure-mediator interactionMulti-Ethnic Study of AtherosclerosisDNA methylation sitesClassCRANMethylation sites
2021
Maternal blood metal concentrations and whole blood DNA methylation during pregnancy in the Early Autism Risk Longitudinal Investigation (EARLI)
Aung M, Bakulski K, Feinberg J, Dou J, Meeker J, Mukherjee B, Loch-Caruso R, Ladd-Acosta C, Volk H, Croen L, Hertz-Picciotto I, Newschaffer C, Fallin M. Maternal blood metal concentrations and whole blood DNA methylation during pregnancy in the Early Autism Risk Longitudinal Investigation (EARLI). Epigenetics 2021, 17: 253-268. PMID: 33794742, PMCID: PMC8920182, DOI: 10.1080/15592294.2021.1897059.Peer-Reviewed Original ResearchConceptsBlood metal concentrationsDNA methylation sitesDNA methylationMetal concentrationsWhole blood DNA methylationK arrayMethylation sitesBlood DNA methylationIllumina 450K arrayGene ontology analysisPotential biomarkers of exposurePrenatal metal exposureCellular metabolic pathwaysDownstream gene pathwaysCell type compositionCalcium ion bindingEarly Autism Risk Longitudinal InvestigationBiomarkers of exposureInductively coupled plasma mass spectrometryNervous system developmentAssociated with hypermethylationMetal exposureIndividual metalsPlasma mass spectrometryOntology analysis