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Collaborative Center for Statistics in Science (C²S²)
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Association Analysis of an Ordinal Trait
ABESS: A polynomial time algorithm for best-subset selection problem
Classification Trees for Multiple Binary Responses
DIPM-Depth Importance in Precision Medicine
diTARV - Tree-based Analysis of Rare Variants with Depth Importance
Forest for Detecting Haplotypes and Interactions among Them in Association with a Disease
Sample response code
Sample Hap File
Sample Output File
Sample Configuration File
LOT - Linkage Analysis of Ordinal Traits
Sample.loc
Sample.ped
Sample.ped.output
MASAL- Multivariate Adaptive Splines for Analysis of Longitudinal Data
modSaRa — Modified Screening and Ranking Algorithm to Detect Chromosome Copy Number Variations
modSaRa2 — Modified Screening and Ranking Algorithm to Detect Chromosome Copy Number Variations Ver2
multiSaRa
pLasso
Function linear.R
function_logistic.R
Sample Linear R
Sample Logistic.R
Y Logistic.txt
Pregnancy Calculator
Robust Variable Selection Procedure Based on Exponential Squared Loss
RTREE — Classification Trees for Risk Profile and Diagnosis
README
Sample data
Output Text Format
SaRa — Sreening and Ranking algorithm for CNV detection
simuRare — Simulating Genomic Data with Rare Variants
SSSS - A Super Scalable Short Segment Detection Algorithm
STB-STC — Super-Taxon Approach for Human Microbes Association Studies
STREE — Survival Analysis Trees
Download
README
Sample Dataset
TARV — Tree-based Analysis of Rare Variants
Twin Analysis — Twin Analysis Using SAS
Sample SAS Program
Simulated Data Set
Sample SAS for Real Data Set
Real Data Set
Willows
Sample Text
Sample SNP Text
Test Text
Test SNP Text
RTREE Sample Text Input
rtree_SNP_sample_SNP.txt.inf
Random Forest Output file
Random forest output file - variable importance score
Random forest output file with SNP data - data description and tree structure.
Random forest output file with SNP data - variable importance score.
Deterministic forest output file - data description and tree structure.
Deterministic forest output file - variable count
Deterministic forest output file with SNP data - data description and tree structure
Deterministic forest output file with SNP data - variable count
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Lectures and Publications
Lectures
Publications
A Forest Approach to Identification of Genes and Gene-Environment Interactions for Complex Diseases
Search for the Smallest Random Forest
Science at Edge Lecture: Genetics Studies of Comorbidity
Robust Variable Selection with Exponential Squared Loss
Myrto Lefkopoulou Distinguished Lecture: Statistical Challenges in Genetic Studies of Mental Disorders
Mixed Effects Multivariate Adaptive Splines Model for the Analysis of Longitudinal and Growth Curve Data (MASAL)
Lecture Notes on Recursive Partition: Tree- and Forest-based Methods
Joint Modeling of Time Series Measures and Recurrent Events
Introduction to Tree - and Forest-based Analysis
Introduction to Genetic Epidemiology
Introduction to Bioinformatics
Introduction to Basic Biology
IMS Medallion Lecturer: A Nonparametric Test for Multivariate Outcomes and Studies of Comorbidity
Genetic Analysis of Ordinal Traits
Change Point Detection and Chromosome Copy Number Variation
Association Analysis for Multiple Traits
Abbott Distinguished Lecture: Genetics Studies of Multivariate Traits
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