2020
An efficient and computationally robust statistical method for analyzing case-control mother–offspring pair genetic association studies
Zhang H, Mukherjee B, Arthur V, Hu G, Hochner H, Chen J. An efficient and computationally robust statistical method for analyzing case-control mother–offspring pair genetic association studies. The Annals Of Applied Statistics 2020, 14: 560-584. DOI: 10.1214/19-aoas1298.Peer-Reviewed Original ResearchEnvironmental risk factorsRisk factorsMaternal environmental risk factorsOffspring genetic effectsPerinatal environmental risk factorsGenetic association studiesFinite sample performancePregnancy healthGenetic risk factorsAssessment of pre-Extensive simulation studyGestational diabetes mellitusIncreased statistical efficiencyLogistic regressionAssociation studiesMaternal genotypeSample performanceMendelian transmissionProfile likelihoodRegression modelsOffspring genotypesEarly-lifeInference proceduresLagrange multiplier methodLikelihood method
2015
A Small-Sample Choice of the Tuning Parameter in Ridge Regression.
Boonstra P, Mukherjee B, Taylor J. A Small-Sample Choice of the Tuning Parameter in Ridge Regression. Statistica Sinica 2015, 25: 1185-1206. PMID: 26985140, PMCID: PMC4790465, DOI: 10.5705/ss.2013.284.Peer-Reviewed Original Research
2013
Bayesian semiparametric analysis for two-phase studies of gene-environment interaction
Ahn J, Mukherjee B, Gruber S, Ghosh M. Bayesian semiparametric analysis for two-phase studies of gene-environment interaction. The Annals Of Applied Statistics 2013, 7: 543-569. PMID: 24587840, PMCID: PMC3935248, DOI: 10.1214/12-aoas599.Peer-Reviewed Original ResearchBayesian variable selection algorithmTwo-phase sampling designGene-environment independencePseudo-likelihood methodJoint effects of genotypeGene-environment interactionsHigh-dimensional modelsWeighted likelihoodCase-control study of colorectal cancerJoint distributionHierarchical priorsSemiparametric analysisRetrospective likelihoodGenetic markersCovariate informationLikelihood methodSimulation studyStudy of gene-environment interactionsStudy of colorectal cancerVariable selection algorithmBayesian approachPhase I dataSub-sample of casesBayesian methodsBayesian analysis