Colin J. Carlson, PhD
Cards
The Carlson Lab
Featured Publication
Contact Info
The Carlson Lab
Featured Publication
Contact Info
The Carlson Lab
Featured Publication
Contact Info
About
Copy Link
Titles
Assistant Professor of Epidemiology (Microbial Diseases)
Affiliated Faculty, Yale Institute for Global Health
Biography
Dr. Carlson is an Assistant Professor of Epidemiology at Yale University School of Public Health. His work explores the challenges faced by health systems in the Anthropocene, with a focus on how climate change increases risks from both infectious diseases of poverty and pandemic threats. His research also explores problems in global health governance, with several ongoing projects focused on the legal, political, and scientific determinants of outbreak reporting and scientific data sharing.
Dr. Carlson is also the co-founder and executive director of Verena, a cross-university collaboration of over a dozen early career scientists developing a data science-driven approach to assessing which viruses pose a risk to human health, and where, when, and why they might emerge in human populations. In 2019, Verena was selected as an NSF Biology Integration Institute, a five-year, $12.5m cooperative agreement that has supported a global study of bat immunology, a cohort of eight doctoral students at five universities, and new open platforms for data sharing.
Prior to joining Yale University, Dr. Carlson was research faculty at Georgetown University’s Center for Global Health Science and Security, and earlier, a postdoctoral fellow at the National Socioenvironmental Synthesis Center at the University of Maryland. He has also contributed to reports by the Intergovernmental Panel on Climate Change (IPCC) and the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES). He holds a Ph.D. in Environmental Science, Policy, and Management from the University of California, Berkeley.
Appointments
Epidemiology of Microbial Diseases
Assistant ProfessorPrimary
Other Departments & Organizations
Education & Training
- Postdoctoral Fellow
- Georgetown University (2020)
- Postdoctoral Fellow
- The National Socioenvironmental Synthesis Center (SESYNC), University of Maryland College Park (2018)
- PhD
- University of California Berkeley, Environmental Science, Policy, and Management (2017)
Research
Copy Link
Overview
Medical Research Interests
Public Health Interests
ORCID
0000-0001-6960-8434- View Lab Website
The Carlson Lab
Research at a Glance
Yale Co-Authors
Research Interests
Cole Brookson, MSc
Cecilia A. Sánchez, PhD
Climate Change
Global Health
Ecology
Machine Learning
Malaria
Anthrax
Publications
Featured Publications
Climate change increases cross-species viral transmission risk
Carlson C, Albery G, Merow C, Trisos C, Zipfel C, Eskew E, Olival K, Ross N, Bansal S. Climate change increases cross-species viral transmission risk. Nature 2022, 607: 555-562. PMID: 35483403, DOI: 10.1038/s41586-022-04788-w.Peer-Reviewed Original ResearchCitationsAltmetricMeSH Keywords and ConceptsConceptsViral sharingRange shiftsRange shifts of speciesHuman population densityGeographic range shiftsUnique dispersal abilityLand-use scenariosShifts of speciesGlobal environmental changeGeographically isolated speciesBiodiversity surveysBiodiversity hotspotHolding warmingMammal speciesDispersal abilityLand-useLand usePotential hotspotsClimate-changePopulation densityCross-species transmissionPhylogeographic modelsEnvironmental changesEcological transitionVirus speciesPathogens and planetary change
Carlson C, Brookson C, Becker D, Cummings C, Gibb R, Halliday F, Heckley A, Huang Z, Lavelle T, Robertson H, Vicente-Santos A, Weets C, Poisot T. Pathogens and planetary change. Nature Reviews Biodiversity 2025, 1: 32-49. DOI: 10.1038/s44358-024-00005-w.Peer-Reviewed Original ResearchCitationsAltmetricConceptsBiodiversity lossAnthropogenic environmental changesLand-use changeBiodiversity conservationWildlife healthLand-useEcological costsDie-offGlobal changeBiodiversityEnvironmental changesEcological interventionsLive animal marketsInfectious disease riskPathogen surveillanceHuman-animal contactPathogensVector-borne diseasesSpeciesEvolutionary principlesWildlifeHigh-risk virusesEcosystemGlobal gapConservation
2025
Health losses attributed to anthropogenic climate change
Carlson C, Mitchell D, Gibb R, Stuart-Smith R, Carleton T, Lavelle T, Lippi C, Lukas-Sithole M, North M, Ryan S, Shumba D, Chersich M, New M, Trisos C. Health losses attributed to anthropogenic climate change. Nature Climate Change 2025, 1-4. DOI: 10.1038/s41558-025-02399-7.Peer-Reviewed Original ResearchCitationsAltmetricComparison of dengue, chikungunya, and Zika among children in Nicaragua across 18 years: a single-centre, prospective cohort study
Carrillo F, Ojeda S, Sanchez N, Plazaola M, Collado D, Miranda T, Saborio S, Mercado B, Monterrey J, Arguello S, Campredon L, Chu Z, Carlson C, Gordon A, Balmaseda A, Kuan G, Harris E. Comparison of dengue, chikungunya, and Zika among children in Nicaragua across 18 years: a single-centre, prospective cohort study. The Lancet Child & Adolescent Health 2025, 9: 622-633. PMID: 40774783, PMCID: PMC12325154, DOI: 10.1016/s2352-4642(25)00168-3.Peer-Reviewed Original ResearchCitationsAltmetricMeSH Keywords and ConceptsConceptsPediatric Dengue Cohort StudyAbsence of feverPresence of arthralgiaClinical featuresProspective cohort studyDays of illnessPresence of basophiliaCohort studyDifferential diagnosisUS National InstitutesDengue disease severityFeatures of dengueDengue virus infectionUS National Institutes of HealthConjunctival injectionGeneralised rashAbdominal painZika casesMedian agePaediatric cohortSingle-centrePaediatric populationPapular rashNational Institutes of HealthVirus infectionNCBITaxonomy.jl: rapid biological names finding and reconciliation
Poisot T, Gibb R, Ryan S, Carlson C. NCBITaxonomy.jl: rapid biological names finding and reconciliation. BMC Ecology And Evolution 2025, 25: 84. PMID: 40836227, PMCID: PMC12366413, DOI: 10.1186/s12862-025-02425-4.Peer-Reviewed Original ResearchAltmetricMeSH Keywords and ConceptsConceptsHeterogeneous biological datasetsBioinformatics pipelineTaxonomic dataNomenclatural changesTaxonomic standardsTaxonomic backboneBiological datasetsProgrammatic accessFuzzy string matchingBiological namesVernacular namesJulia packageCopyWorkflow executionLocal storageLocal copyString matchingExceptional systemsMatching capabilitiesNCBIDistance functionAutomated processBioinformaticsLineagesSynonymsThe LISTEN principles for genetic sequence data governance and database engineering
Carlson C, Granados M, Phelan A, Ramakrishnan N, Poisot T. The LISTEN principles for genetic sequence data governance and database engineering. Nature Genetics 2025, 57: 2099-2105. PMID: 40721529, DOI: 10.1038/s41588-025-02270-7.Peer-Reviewed Original ResearchCitationsAltmetricMeSH Keywords and ConceptsPathways to an Intergovernmental Panel on Pandemics: lessons from the IPCC and IPBES
Carlson C, Trisos C, Oppenheim B, Bansal S, Davies S, Diongue-Niang A, Fan V, Kraemer J, Golden Kroner R, Gostin L, Hayman D, Koopmans M, Lavelle T, das Neves C, O'Donoghue Z, Pereira L, Roche B, Sirleaf M, Zamanian K, Zambrana-Torrelio C, Phelan A. Pathways to an Intergovernmental Panel on Pandemics: lessons from the IPCC and IPBES. The Lancet Microbe 2025, 101178. PMID: 40683284, DOI: 10.1016/j.lanmic.2025.101178.Peer-Reviewed Original ResearchCitationsAltmetricConceptsIntergovernmental PanelIntergovernmental Science-Policy PlatformClimate changeBiodiversity lossHuman wellbeingBiodiversityGlobal threatPanelNational governmentsIntergovernmentalIPCCGovernmentClimateIPBPandemic riskPlanetary crisisPotential pathwaysEconomyEcosystemScientific scopeCrisisPolicyInternational organisationsBiodiversity science and biosurveillance are fellow travelers
Poisot T, Becker D, Catchen M, Gibb R, Shimabukuro P, Carlson C. Biodiversity science and biosurveillance are fellow travelers. BioScience 2025, biaf091. DOI: 10.1093/biosci/biaf091.Peer-Reviewed Original ResearchCitationsAltmetricA minimum data standard for wildlife disease research and surveillance
Schwantes C, Sánchez C, Stevens T, Zimmerman R, Albery G, Becker D, Brookson C, Kading R, Keiser C, Khandelwal S, Kramer-Schadt S, Krut-Landau R, McKee C, Montecino-Latorre D, O’Donoghue Z, Olson S, O’Shea M, Poisot T, Robertson H, Ryan S, Seifert S, Simons D, Vicente-Santos A, Wood C, Graeden E, Carlson C. A minimum data standard for wildlife disease research and surveillance. Scientific Data 2025, 12: 1054. PMID: 40544158, PMCID: PMC12182584, DOI: 10.1038/s41597-025-05332-x.Peer-Reviewed Original ResearchCitationsAltmetricMeSH Keywords and ConceptsVector competence for Oropouche virus: A systematic review of pre-2024 experiments
Gallichotte E, Ebel G, Carlson C. Vector competence for Oropouche virus: A systematic review of pre-2024 experiments. PLOS Neglected Tropical Diseases 2025, 19: e0013014. PMID: 40305476, PMCID: PMC12043118, DOI: 10.1371/journal.pntd.0013014.Peer-Reviewed Original ResearchCitationsAltmetricMeSH Keywords and Concepts
Academic Achievements & Community Involvement
Copy Link
Activities
activity PEPFAR Scientific Advisory Board
2024 - PresentAdvisory BoardsMemberDetailsSubcommittee on Global Health Securityactivity npj Climate Action
2021 - PresentJournal ServiceEditorial Board Memberactivity International Union for the Conservation of Nature Species Survival Commission (IUCN SSC)
2023 - PresentPublic ServiceMemberDetailsMember, Parasite Specialist Groupactivity Intergovernmental Panel on Climate Change (IPCC)
2019 - 2022Public ServiceAuthorDetailsContributing author, Sixth Assessment Report (WGII)activity Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES)
2016 - 2018Public ServiceAuthorDetailsContributing author, Assessment Report on Land Degradation and Restoration
News & Links
Copy Link
News
- October 21, 2025Source: CNN
Mosquitoes in Iceland? YSPH epidemiologist says discovery reflects how little we know about mosquito range shifts
- July 23, 2025Source: Carbon Brief
Climate change is creating ‘new vulnerabilities’ for disease pandemics
- July 21, 2025
New YSPH Pilot Grants Support Innovative Interdisciplinary Research
- May 27, 2025Source: Yale News
Yale Planetary Solutions Announces a New ‘Constellation’ of Grants
Related Links
Get In Touch
Copy Link
Contacts
Locations
Public Health Modeling Unit
Academic Office
350 George Street, Fl 3rd Floor, Rm 321
New Haven, CT 06511
Social Media