Colin J. Carlson, PhD
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The Carlson Lab
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About
Titles
Assistant Professor of Epidemiology (Microbial Diseases)
Affiliated Faculty, Yale Institute for Global Health
Biography
Dr. Carlson is an Assistant Professor of Epidemiology at Yale University School of Public Health. His work explores the challenges faced by health systems in the Anthropocene, with a focus on how climate change increases risks from both infectious diseases of poverty and pandemic threats. His research also explores problems in global health governance, with several ongoing projects focused on the legal, political, and scientific determinants of outbreak reporting and scientific data sharing.
Dr. Carlson is also the co-founder and executive director of Verena, a cross-university collaboration of over a dozen early career scientists developing a data science-driven approach to assessing which viruses pose a risk to human health, and where, when, and why they might emerge in human populations. In 2019, Verena was selected as an NSF Biology Integration Institute, a five-year, $12.5m cooperative agreement that has supported a global study of bat immunology, a cohort of eight doctoral students at five universities, and new open platforms for data sharing.
Prior to joining Yale University, Dr. Carlson was research faculty at Georgetown University’s Center for Global Health Science and Security, and earlier, a postdoctoral fellow at the National Socioenvironmental Synthesis Center at the University of Maryland. He has also contributed to reports by the Intergovernmental Panel on Climate Change (IPCC) and the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES). He holds a Ph.D. in Environmental Science, Policy, and Management from the University of California, Berkeley.
Appointments
Epidemiology of Microbial Diseases
Assistant ProfessorPrimary
Other Departments & Organizations
Education & Training
- Postdoctoral Fellow
- Georgetown University (2020)
- Postdoctoral Fellow
- The National Socioenvironmental Synthesis Center (SESYNC), University of Maryland College Park (2018)
- PhD
- University of California Berkeley, Environmental Science, Policy, and Management (2017)
Research
Overview
Medical Research Interests
Public Health Interests
ORCID
0000-0001-6960-8434- View Lab Website
The Carlson Lab
Research at a Glance
Yale Co-Authors
Research Interests
Cole Brookson, MSc
Climate Change
Global Health
Ecology
Machine Learning
Malaria
Anthrax
Publications
Featured Publications
Climate change increases cross-species viral transmission risk
Carlson C, Albery G, Merow C, Trisos C, Zipfel C, Eskew E, Olival K, Ross N, Bansal S. Climate change increases cross-species viral transmission risk. Nature 2022, 607: 555-562. PMID: 35483403, DOI: 10.1038/s41586-022-04788-w.Peer-Reviewed Original ResearchMeSH Keywords and ConceptsConceptsViral sharingRange shiftsRange shifts of speciesHuman population densityGeographic range shiftsUnique dispersal abilityLand-use scenariosShifts of speciesGlobal environmental changeGeographically isolated speciesBiodiversity surveysBiodiversity hotspotHolding warmingMammal speciesDispersal abilityLand-useLand usePotential hotspotsClimate-changePopulation densityCross-species transmissionPhylogeographic modelsEnvironmental changesEcological transitionVirus species
2025
Viral genomic features predict Orthopoxvirus reservoir hosts
Tseng K, Koehler H, Becker D, Gibb R, Carlson C, Pilar Fernandez M, Seifert S. Viral genomic features predict Orthopoxvirus reservoir hosts. Communications Biology 2025, 8: 309. PMID: 40000824, PMCID: PMC11862092, DOI: 10.1038/s42003-025-07746-0.Peer-Reviewed Original ResearchMeSH Keywords and ConceptsConceptsHost speciesViral genomic featuresHost ecological traitsPotential host speciesGenomic featuresHistorical rangeEcological traitsParts of Southeast AsiaWildlife surveillanceHuman populationCausative agent of smallpoxHost predictionAgent of smallpoxSpeciesSoutheast AsiaCausative agentGeographic regionsOrthopoxvirusesObservational research in epidemic settings: a roadmap to reform
Ricotta E, Carrillo F, Angelli-Nichols S, Barugahare J, Benton A, Carlson C, Chang-Rabley E, Dean N, Duda S, Federer L, Fill M, LeRoy E, Linton N, Lipsitch M, Mathur M, Phelan A, Rid A, Rosen J, Sauer L, Sullivan S, Zendt M, Evans N. Observational research in epidemic settings: a roadmap to reform. BMJ Global Health 2025, 10: e017981. PMID: 39929534, PMCID: PMC11815396, DOI: 10.1136/bmjgh-2024-017981.Peer-Reviewed Original ResearchMeSH Keywords and ConceptsTen quick tips to build a Model Life Cycle
Poisot T, Becker D, Brookson C, Graeden E, Ryan S, Turon G, Carlson C. Ten quick tips to build a Model Life Cycle. PLOS Computational Biology 2025, 21: e1012731. PMID: 39899593, PMCID: PMC11790144, DOI: 10.1371/journal.pcbi.1012731.Peer-Reviewed Original ResearchA framework for managing infectious diseases in rural areas in low- and middle-income countries in the face of climate change—East Africa as a case study
Worsley-Tonks K, Angwenyi S, Carlson C, Cissé G, Deem S, Ferguson A, Fèvre E, Kimaro E, Kimiti D, Martins D, Merbold L, Mottet A, Murray S, Muturi M, Potter T, Prasad S, Wild H, Hassell J. A framework for managing infectious diseases in rural areas in low- and middle-income countries in the face of climate change—East Africa as a case study. PLOS Global Public Health 2025, 5: e0003892. PMID: 39883787, PMCID: PMC11781624, DOI: 10.1371/journal.pgph.0003892.Peer-Reviewed Original ResearchConceptsMiddle-income countriesHealth systemDisease riskClimate changeRural areasExposure to climate-related hazardsInfectious disease riskClimate change adaptation strategiesBurden of infectious diseasesChange adaptation strategiesClimate change impactsContext of climate changeClimate-related hazardsDisease burdenHealthRural communitiesChange impactsHuman healthSystems climateAdaptation strategiesClimateInfectious diseasesBurdenDisease scenariosRiskThe WHO Disease Outbreak News during the Covid-19 pandemic
Weets C, Carlson C, Robertson H, Toole K, McGivern L, Graeden E, Katz R. The WHO Disease Outbreak News during the Covid-19 pandemic. PLOS Global Public Health 2025, 5: e0004025. PMID: 39869635, PMCID: PMC11771871, DOI: 10.1371/journal.pgph.0004025.Peer-Reviewed Original ResearchPathogens and planetary change
Carlson C, Brookson C, Becker D, Cummings C, Gibb R, Halliday F, Heckley A, Huang Z, Lavelle T, Robertson H, Vicente-Santos A, Weets C, Poisot T. Pathogens and planetary change. Nature Reviews Biodiversity 2025, 1: 32-49. DOI: 10.1038/s44358-024-00005-w.Peer-Reviewed Original ResearchConceptsBiodiversity lossAnthropogenic environmental changesLand-use changeBiodiversity conservationWildlife healthLand-useEcological costsDie-offGlobal changeBiodiversityEnvironmental changesEcological interventionsLive animal marketsInfectious disease riskPathogen surveillanceHuman-animal contactPathogensVector-borne diseasesSpeciesEvolutionary principlesWildlifeHigh-risk virusesEcosystemGlobal gapConservation
2024
Core components of infectious disease outbreak response
Moore M, Robertson H, Rosado D, Graeden E, Carlson C, Katz R. Core components of infectious disease outbreak response. SSM - Health Systems 2024, 3: 100030. DOI: 10.1016/j.ssmhs.2024.100030.Peer-Reviewed Original ResearchReconstructing 120 years of climate change impacts on Joshua tree flowering
Yoder J, Andrade A, DeFalco L, Esque T, Carlson C, Shryock D, Yeager R, Smith C. Reconstructing 120 years of climate change impacts on Joshua tree flowering. Ecology Letters 2024, 27: e14478. PMID: 39092581, DOI: 10.1111/ele.14478.Peer-Reviewed Original ResearchMeSH Keywords and ConceptsConceptsClimate change impactsJoshua treesChange impactsMasting eventsWild populationsClimate change effectsDrought stressFlowering eventsTree flowersFlowersMojave DesertChange effectsAnnual precipitationIncreased variationWeather recordsNegative impactHistorical recordsTreesClimateSystematic datasetPerennialsBiodiversitySpeciesStrategic vaccine stockpiles for regional epidemics of emerging viruses: A geospatial modeling framework
Carlson C, Garnier R, Tiu A, Luby S, Bansal S. Strategic vaccine stockpiles for regional epidemics of emerging viruses: A geospatial modeling framework. Vaccine 2024, 42: 126051. PMID: 38902187, DOI: 10.1016/j.vaccine.2024.06.019.Peer-Reviewed Original Research
Academic Achievements & Community Involvement
activity International Union for the Conservation of Nature Species Survival Commission (IUCN SSC)
Public ServiceMemberDetailsMember, Parasite Specialist Group2023 - Presentactivity PEPFAR Scientific Advisory Board
Advisory BoardsMemberDetailsSubcommittee on Global Health Security2024 - Presentactivity npj Climate Action
Journal ServiceEditorial Board MemberDetails2021 - Presentactivity Intergovernmental Panel on Climate Change (IPCC)
Public ServiceAuthorDetailsContributing author, Sixth Assessment Report (WGII)2019 - 2022activity Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES)
Public ServiceAuthorDetailsContributing author, Assessment Report on Land Degradation and Restoration2016 - 2018
News & Links
News
- January 21, 2025Source: Think Global Health
Prioritizing Prevention in the Pandemic Treaty
- January 16, 2025
The bird flu threat to humans in the United States
- December 20, 2024
New Faculty Spotlight Series: Colin Carlson
- September 23, 2024Source: The Seattle Times
Was it really a hot summer?
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350 George Street, Fl 3rd Floor, Rm 321
New Haven, CT 06511
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