2013
Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data
Bengtsson‐Palme J, Ryberg M, Hartmann M, Branco S, Wang Z, Godhe A, De Wit P, Sánchez‐García M, Ebersberger I, de Sousa F, Amend A, Jumpponen A, Unterseher M, Kristiansson E, Abarenkov K, Bertrand Y, Sanli K, Eriksson K, Vik U, Veldre V, Nilsson R. Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data. Methods In Ecology And Evolution 2013, 4: 914-919. DOI: 10.1111/2041-210x.12073.Peer-Reviewed Original ResearchData setsLarge data setsSoftware detectionSequence analysis pipelineSoftware toolsProcess parallelizationSequence clusteringHigh-throughput sequencing data setsExpedient analysisSequence extractionNext-generation sequencing data setsAnalysis pipelineSequencing data setsLarge alignmentsNon-target sequencesMarkov modelEnvironmental data setsSequence databasesPublic sequence databasesEnvironmental sequencing dataSetExtractionParallelizationSearchSoftware
2011
A note on the incidence of reverse complementary fungal ITS sequences in the public sequence databases and a software tool for their detection and reorientation
Nilsson R, Veldre V, Wang Z, Eckart M, Branco S, Hartmann M, Quince C, Godhe A, Bertrand Y, Alfredsson J, Larsson K, Kõljalg U, Abarenkov K. A note on the incidence of reverse complementary fungal ITS sequences in the public sequence databases and a software tool for their detection and reorientation. Mycoscience 2011, 52: 278-282. DOI: 10.1007/s10267-010-0086-z.Peer-Reviewed Original ResearchA note on the incidence of reverse complementary fungal ITS sequences in the public sequence databases and a software tool for their detection and reorientation
Nilsson R, Veldre V, Wang Z, Eckart M, Branco S, Hartmann M, Quince C, Godhe A, Bertrand Y, Alfredsson J, Larsson K, Kõljalg U, Abarenkov K. A note on the incidence of reverse complementary fungal ITS sequences in the public sequence databases and a software tool for their detection and reorientation. Mycoscience 2011, 52: 278-282. DOI: 10.47371/s10267-010-0086-z.Peer-Reviewed Original Research