Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data
Bengtsson‐Palme J, Ryberg M, Hartmann M, Branco S, Wang Z, Godhe A, De Wit P, Sánchez‐García M, Ebersberger I, de Sousa F, Amend A, Jumpponen A, Unterseher M, Kristiansson E, Abarenkov K, Bertrand Y, Sanli K, Eriksson K, Vik U, Veldre V, Nilsson R. Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data. Methods In Ecology And Evolution 2013, 4: 914-919. DOI: 10.1111/2041-210x.12073.Peer-Reviewed Original ResearchData setsLarge data setsSoftware detectionSequence analysis pipelineSoftware toolsProcess parallelizationSequence clusteringHigh-throughput sequencing data setsExpedient analysisSequence extractionNext-generation sequencing data setsAnalysis pipelineSequencing data setsLarge alignmentsNon-target sequencesMarkov modelEnvironmental data setsSequence databasesPublic sequence databasesEnvironmental sequencing dataSetExtractionParallelizationSearchSoftware