2017
New insights on the sister lineage of percomorph fishes with an anchored hybrid enrichment dataset
Dornburg A, Townsend JP, Brooks W, Spriggs E, Eytan RI, Moore JA, Wainwright PC, Lemmon A, Lemmon EM, Near TJ. New insights on the sister lineage of percomorph fishes with an anchored hybrid enrichment dataset. Molecular Phylogenetics And Evolution 2017, 110: 27-38. PMID: 28254474, DOI: 10.1016/j.ympev.2017.02.017.Peer-Reviewed Original Research
2012
Codon Deviation Coefficient: a novel measure for estimating codon usage bias and its statistical significance
Zhang Z, Li J, Cui P, Ding F, Li A, Townsend JP, Yu J. Codon Deviation Coefficient: a novel measure for estimating codon usage bias and its statistical significance. BMC Bioinformatics 2012, 13: 43. PMID: 22435713, PMCID: PMC3368730, DOI: 10.1186/1471-2105-13-43.Peer-Reviewed Original ResearchConceptsCodon usage biasNucleotide compositionUsage biasGenome evolutionGene functionProtein functionCodon usageNatural selectionCodon positionsTranslational efficiencySelective pressureSequence compositionGene expressionSequence analysisSimulated sequencesSequenceGenomeGenesFundamental importanceMutationsInformative estimationExpression
2000
Manifold anomalies in gene expression in a vineyard isolate of Saccharomyces cerevisiae revealed by DNA microarray analysis
Cavalieri D, Townsend J, Hartl D. Manifold anomalies in gene expression in a vineyard isolate of Saccharomyces cerevisiae revealed by DNA microarray analysis. Proceedings Of The National Academy Of Sciences Of The United States Of America 2000, 97: 12369-12374. PMID: 11035792, PMCID: PMC17348, DOI: 10.1073/pnas.210395297.Peer-Reviewed Original ResearchConceptsDNA microarray analysisGene expressionNatural populationsSaccharomyces cerevisiaeMicroarray analysisGenome-wide transcriptional profilingAmino acid permeasesAmino acid biosynthesisSuite of traitsGlobal expression analysisSmooth colony phenotypeExtent of heterozygosityGlobal patternsVineyard isolateGene functionEvolutionary biologyNitrogen assimilationAcid biosynthesisSingle geneTranscriptional profilingUnlinked lociColony phenotypeHomothallic strainsS. cerevisiaeDiploid progeny