2023
Genomic characterization of SARS-CoV-2 from an indigenous reserve in Mato Grosso do Sul, Brazil
de Oliveira L, de Rezende I, Navarini V, Marchioro S, Torres A, Croda J, Croda M, Gonçalves C, Xavier J, de Castro E, Lima M, Iani F, Adelino T, Aburjaile F, Demarchi L, Taira D, Zardin M, Fonseca V, Giovanetti M, Andrews J, Alcantara L, Simionatto S. Genomic characterization of SARS-CoV-2 from an indigenous reserve in Mato Grosso do Sul, Brazil. Frontiers In Public Health 2023, 11: 1195779. PMID: 37965526, PMCID: PMC10641392, DOI: 10.3389/fpubh.2023.1195779.Peer-Reviewed Original ResearchConceptsSARS-CoV-2 lineagesIntroduction eventsCharacterization of SARS-CoV-2Nanopore sequencing platformSARS-CoV-2 positive samplesMultiple SARS-CoV-2 variantsMultiple introduction eventsPhylogenetic reconstructionPhylogenetic dataGenome sequenceSequencing platformsGenomic characterizationSARS-CoV-2Genomic surveillanceSARS-CoV-2 variantsLineagesMato GrossoMortality rateViral dynamicsIndigenous populationCo-circulationPrevalence of malesMidwestern BrazilPositive samplesIndigenous mobilization
2021
Pooling Sputum Samples for Efficient Mass Tuberculosis Screening in Prisons
Dos Santos P, da Silva Santos A, de Oliveira R, da Silva B, Soares T, Martinez L, Verma R, Andrews J, Croda J. Pooling Sputum Samples for Efficient Mass Tuberculosis Screening in Prisons. Clinical Infectious Diseases 2021, 74: 2115-2121. PMID: 34718459, PMCID: PMC9258923, DOI: 10.1093/cid/ciab847.Peer-Reviewed Original ResearchConceptsWorld Health OrganizationTuberculosis screeningMycobacterial loadHigh prevalenceSputum samplesMass screeningHigh tuberculosis prevalenceHigh-risk groupHigher mycobacterial loadPositive samplesTuberculosis casesPrevalence settingsTuberculosis prevalenceLow prevalenceSingle positive samplePrevalenceActive casesHealth Organization