Featured Publications
GEM-NET: Lessons in Multi-Institution Teamwork Using Collaboration Software
Gaffney SG, Ad O, Smaga S, Schepartz A, Townsend JP. GEM-NET: Lessons in Multi-Institution Teamwork Using Collaboration Software. ACS Central Science 2019, 5: 1159-1169. PMID: 31404233, PMCID: PMC6661976, DOI: 10.1021/acscentsci.9b00111.Peer-Reviewed Original ResearchSoftware infrastructureMulti-institution teamOpen source codeCollaboration softwareCode editingData sharingSource codeTask managementCustom applicationsCollaborative documentInfrastructureCommunicationMultiple fieldsInternal communicationUsersUniversity campusSchedulingSecuritySharingSoftwareTeamCodeImplementationDocumentsGoal
2021
Chemsearch: collaborative compound libraries with structure-aware browsing
Gaffney S, Smaga S, Schepartz A, Townsend J. Chemsearch: collaborative compound libraries with structure-aware browsing. Bioinformatics Advances 2021, 1: vbab008. PMID: 36700113, PMCID: PMC9710581, DOI: 10.1093/bioadv/vbab008.Peer-Reviewed Original ResearchAccess controlServer applicationsWeb applicationDocker imageSource codeData storageEasy navigationRapid deploymentData filesCompound librariesCompounds of interestChemical compound librariesBrowsingLibraryNavigationSimilar compoundsDeploymentFilesApplicationsStructural propertiesImagesCompoundsImplementationCodeDocuments
2016
PathScore: a web tool for identifying altered pathways in cancer data
Gaffney SG, Townsend JP. PathScore: a web tool for identifying altered pathways in cancer data. Bioinformatics 2016, 32: 3688-3690. PMID: 27503224, DOI: 10.1093/bioinformatics/btw512.Peer-Reviewed Original Research