Functional Analysis of Omics Data: Gene Set Enrichment Analysis (GSEA)
Gene Set Enrichment Analysis (GSEA) (UC San Diego/Broad Institute) determines whether a set of genes shows statistically significant differences between two biological conditions (e.g., phenotypes). From this session/workshop you will learn how to run GSEA on your own datasets using the GSEA desktop application. During the session we will use a tutorial dataset that will be made available to all the registrants.
The goals of the session are:
1. To learn how to prepare your data and files for running GSEA.
2. To learn about Molecular Signature Database (MSigDB).
3. To learn how to run GSEA analysis and the Leading edge analysis and results interpretation.
4. Send and visualize the results using the Enrichment Map app.
This session is suitable for both beginner and intermediate users of GSEA.
Prerequisites:
Download and install the GSEA desktop version on your laptop.
Download and install Cytoscape software
A tutorial dataset will be made available to all registrants.
