2025
A Selective Review of Network Analysis Methods for Gene Expression Data
Li R, Yi H, Ma S. A Selective Review of Network Analysis Methods for Gene Expression Data. Methods In Molecular Biology 2025, 2880: 293-307. PMID: 39900765, DOI: 10.1007/978-1-0716-4276-4_14.Peer-Reviewed Original ResearchConceptsGene Expression DataGene expression networksExpression DataDownstream analysisExpression networksGene expressionBiological processesGenesMolecular mechanismsBiological implicationsHigh-throughput profiling techniquesBiological findingsGlobal viewComplex interactionsProfiling techniquesRegulation
2023
FunctanSNP: an R package for functional analysis of dense SNP data (with interactions)
Ren R, Fang K, Zhang Q, Ma S. FunctanSNP: an R package for functional analysis of dense SNP data (with interactions). Bioinformatics 2023, 39: btad741. PMID: 38060266, PMCID: PMC10723032, DOI: 10.1093/bioinformatics/btad741.Peer-Reviewed Original ResearchReproducibility of ResultsSoftware
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