2023
Tutorial: using NEURON for neuromechanical simulations
Fietkiewicz C, McDougal R, Marco D, Chiel H, Thomas P. Tutorial: using NEURON for neuromechanical simulations. Frontiers In Computational Neuroscience 2023, 17: 1143323. PMID: 37583894, PMCID: PMC10424731, DOI: 10.3389/fncom.2023.1143323.Peer-Reviewed Original ResearchUse of pointersCode modularityCode reuseSeparate specificationComplex adaptive behaviorSimulation platformDifferent computational modelsComplicated syntaxClosed-loop modelSimulation toolNeuromechanical modelingNeuron simulationsLevel of complexityComputational modelNeuromechanical simulationsTutorialPointersNon-smooth dynamicsPedagogical modelNeural dynamicsProgramming optionsBody dynamicsModelingAdaptive behaviorFirst step
2022
BioSimulators: a central registry of simulation engines and services for recommending specific tools
Shaikh B, Smith L, Vasilescu D, Marupilla G, Wilson M, Agmon E, Agnew H, Andrews S, Anwar A, Beber M, Bergmann F, Brooks D, Brusch L, Calzone L, Choi K, Cooper J, Detloff J, Drawert B, Dumontier M, Ermentrout G, Faeder J, Freiburger A, Fröhlich F, Funahashi A, Garny A, Gennari J, Gleeson P, Goelzer A, Haiman Z, Hasenauer J, Hellerstein J, Hermjakob H, Hoops S, Ison J, Jahn D, Jakubowski H, Jordan R, Kalaš M, König M, Liebermeister W, Sheriff R, Mandal S, McDougal R, Medley J, Mendes P, Müller R, Myers C, Naldi A, Nguyen T, Nickerson D, Olivier B, Patoliya D, Paulevé L, Petzold L, Priya A, Rampadarath A, Rohwer J, Saglam A, Singh D, Sinha A, Snoep J, Sorby H, Spangler R, Starruß J, Thomas P, van Niekerk D, Weindl D, Zhang F, Zhukova A, Goldberg A, Schaff J, Blinov M, Sauro H, Moraru I, Karr J. BioSimulators: a central registry of simulation engines and services for recommending specific tools. Nucleic Acids Research 2022, 50: w108-w114. PMID: 35524558, PMCID: PMC9252793, DOI: 10.1093/nar/gkac331.Peer-Reviewed Original Research
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