2023
Pf7: an open dataset of Plasmodium falciparum genome variation in 20,000 worldwide samples
MalariaGEN, Hamid M, Abdelraheem M, Acheampong D, Ahouidi A, Ali M, Almagro-Garcia J, Amambua-Ngwa A, Amaratunga C, Amenga-Etego L, Andagalu B, Anderson T, Andrianaranjaka V, Aniebo I, Aninagyei E, Ansah F, Ansah P, Apinjoh T, Arnaldo P, Ashley E, Auburn S, Awandare G, Ba H, Baraka V, Barry A, Bejon P, Bertin G, Boni M, Borrmann S, Bousema T, Bouyou-Akotet M, Branch O, Bull P, Cheah H, Chindavongsa K, Chookajorn T, Chotivanich K, Claessens A, Conway D, Corredor V, Courtier E, Craig A, D'Alessandro U, Dama S, Day N, Denis B, Dhorda M, Diakite M, Djimde A, Dolecek C, Dondorp A, Doumbia S, Drakeley C, Drury E, Duffy P, Echeverry D, Egwang T, Enosse S, Erko B, Fairhurst R, Faiz A, Fanello C, Fleharty M, Forbes M, Fukuda M, Gamboa D, Ghansah A, Golassa L, Goncalves S, Harrison G, Healy S, Hendry J, Hernandez-Koutoucheva A, Hien T, Hill C, Hombhanje F, Hott A, Htut Y, Hussein M, Imwong M, Ishengoma D, Jackson S, Jacob C, Jeans J, Johnson K, Kamaliddin C, Kamau E, Keatley J, Kochakarn T, Konate D, Konaté A, Kone A, Kwiatkowski D, Kyaw M, Kyle D, Lawniczak M, Lee S, Lemnge M, Lim P, Lon C, Loua K, Mandara C, Marfurt J, Marsh K, Maude R, Mayxay M, Maïga-Ascofaré O, Miotto O, Mita T, Mobegi V, Mohamed A, Mokuolu O, Montgomery J, Morang’a C, Mueller I, Murie K, Newton P, Duc T, Nguyen T, Nguyen T, Kim T, Van H, Noedl H, Nosten F, Noviyanti R, Ntui V, Nzila A, Ochola-Oyier L, Ocholla H, Oduro A, Omedo I, Onyamboko M, Ouedraogo J, Oyebola K, Oyibo W, Pearson R, Peshu N, Phyo A, Plowe C, Price R, Pukrittayakamee S, Quang H, Randrianarivelojosia M, Rayner J, Ringwald P, Rosanas-Urgell A, Rovira-Vallbona E, Ruano-Rubio V, Ruiz L, Saunders D, Shayo A, Siba P, Simpson V, Sissoko M, Smith C, Su X, Sutherland C, Takala-Harrison S, Talman A, Tavul L, Thanh N, Thathy V, Thu A, Toure M, Tshefu A, Verra F, Vinetz J, Wellems T, Wendler J, White N, Whitton G, Yavo W, van der Pluijm R. Pf7: an open dataset of Plasmodium falciparum genome variation in 20,000 worldwide samples. Wellcome Open Research 2023, 8: 22. PMID: 36864926, PMCID: PMC9971654, DOI: 10.12688/wellcomeopenres.18681.1.Peer-Reviewed Original Research
2021
An open dataset of Plasmodium falciparum genome variation in 7,000 worldwide samples
Ahouidi A, Ali M, Almagro-Garcia J, Amambua-Ngwa A, Amaratunga C, Amato R, Amenga-Etego L, Andagalu B, Anderson T, Andrianaranjaka V, Apinjoh T, Ariani C, Ashley E, Auburn S, Awandare G, Ba H, Baraka V, Barry A, Bejon P, Bertin G, Boni M, Borrmann S, Bousema T, Branch O, Bull P, Busby G, Chookajorn T, Chotivanich K, Claessens A, Conway D, Craig A, D'Alessandro U, Dama S, Day N, Denis B, Diakite M, Djimdé A, Dolecek C, Dondorp A, Drakeley C, Drury E, Duffy P, Echeverry D, Egwang T, Erko B, Fairhurst R, Faiz A, Fanello C, Fukuda M, Gamboa D, Ghansah A, Golassa L, Goncalves S, Hamilton W, Harrison G, Hart L, Henrichs C, Hien T, Hill C, Hodgson A, Hubbart C, Imwong M, Ishengoma D, Jackson S, Jacob C, Jeffery B, Jeffreys A, Johnson K, Jyothi D, Kamaliddin C, Kamau E, Kekre M, Kluczynski K, Kochakarn T, Konaté A, Kwiatkowski D, Kyaw M, Lim P, Lon C, Loua K, Maïga-Ascofaré O, Malangone C, Manske M, Marfurt J, Marsh K, Mayxay M, Miles A, Miotto O, Mobegi V, Mokuolu O, Montgomery J, Mueller I, Newton P, Nguyen T, Nguyen T, Noedl H, Nosten F, Noviyanti R, Nzila A, Ochola-Oyier L, Ocholla H, Oduro A, Omedo I, Onyamboko M, Ouedraogo J, Oyebola K, Pearson R, Peshu N, Phyo A, Plowe C, Price R, Pukrittayakamee S, Randrianarivelojosia M, Rayner J, Ringwald P, Rockett K, Rowlands K, Ruiz L, Saunders D, Shayo A, Siba P, Simpson V, Stalker J, Su X, Sutherland C, Takala-Harrison S, Tavul L, Thathy V, Tshefu A, Verra F, Vinetz J, Wellems T, Wendler J, White N, Wright I, Yavo W, Ye H. An open dataset of Plasmodium falciparum genome variation in 7,000 worldwide samples. Wellcome Open Research 2021, 6: 42. DOI: 10.12688/wellcomeopenres.16168.1.Peer-Reviewed Original ResearchSingle nucleotide polymorphismsStrong geographic differentiationGenome variation dataHigh-quality genotypesGeographic differentiationGenome variationGenetic evidenceShort indelsEvolutionary processesStructural variantsMosquito stagesNumber variantsData-sharing networksNucleotide polymorphismsVariation dataWorldwide sampleAnalysis pipelineGenomic epidemiologyMarker of resistanceDrug resistanceSurveillance toolkitIndelsGenesLociVariants
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