2025
Leveraging local ancestry and cross-ancestry genetic architecture to improve genetic prediction of complex traits in admixed populations
Zhou G, Yolou I, Xie Y, Zhao H. Leveraging local ancestry and cross-ancestry genetic architecture to improve genetic prediction of complex traits in admixed populations. American Journal Of Human Genetics 2025, 112: 1923-1935. PMID: 40633541, PMCID: PMC12252582, DOI: 10.1016/j.ajhg.2025.06.010.Peer-Reviewed Original ResearchConceptsPolygenic risk scoresAdmixed individualsNon-European populationsLocal ancestryTransferability of PRSPerformance of polygenic risk scoresAdmixed populationsCross-ancestryPolygenic risk score calculatorGenetic prediction of complex traitsGenetic predictionEffect sizePrediction of complex traitsPopulation ArchitectureUK BiobankPolygenic predictionAdmixed AmericansAncestry clustersGenetic architectureComplex traitsPRS modelRisk scoreGenetic variantsAncestryIndividualsRefining breast cancer genetic risk and biology through multi-ancestry fine-mapping analyses of 192 risk regions
Jia G, Chen Z, Ping J, Cai Q, Tao R, Li C, Bauer J, Xie Y, Ambs S, Barnard M, Chen Y, Choi J, Gao Y, Garcia-Closas M, Gu J, Hu J, Iwasaki M, John E, Kweon S, Li C, Matsuda K, Matsuo K, Nathanson K, Nemesure B, Olopade O, Pal T, Park S, Park B, Press M, Sanderson M, Sandler D, Shen C, Troester M, Yao S, Zheng Y, Ahearn T, Brewster A, Falusi A, Hennis A, Ito H, Kubo M, Lee E, Makumbi T, Ndom P, Noh D, O’Brien K, Ojengbede O, Olshan A, Park M, Reid S, Yamaji T, Zirpoli G, Butler E, Huang M, Low S, Obafunwa J, Weinberg C, Zhang H, Zhao H, Cote M, Ambrosone C, Huo D, Li B, Kang D, Palmer J, Shu X, Haiman C, Guo X, Long J, Zheng W. Refining breast cancer genetic risk and biology through multi-ancestry fine-mapping analyses of 192 risk regions. Nature Genetics 2025, 57: 80-87. PMID: 39753771, PMCID: PMC12184877, DOI: 10.1038/s41588-024-02031-y.Peer-Reviewed Original ResearchConceptsFine-mapping analysisAssociation signalsRisk lociBreast cancer genetic riskGenome-wide association study dataBreast cancer risk lociFemale breast cancer casesGenome-wide association studiesCancer genetic riskBreast cancer geneticsBreast cancer riskFunctional genomics dataCredible causal variantsCancer risk lociGenetic risk lociBreast cancer casesSingle-cell RNA sequencingBreast cancerCausal variantsFine-mappingGenomic dataAssociation studiesCancer riskCancer geneticsCancer casesPerformance of Polygenic Risk Scores for Primary Open-Angle Glaucoma in Populations of African Descent
Chang-Wolf J, Kinzy T, Driessen S, Cruz L, Iyengar S, Peachey N, Aung T, Khor C, Williams S, Ramsay M, Olawoye O, Ashaye A, Klaver C, Hauser M, Thiadens A, Cooke Bailey J, Bonnemaijer P, Sanywia A, Cook C, Hassan H, Kanyaro N, Ntomoka C, Allingham R, van der Heide C, Taylor K, Rotter J, Wang S, ABDULLAHI S, Abu-Amero K, Anderson M, Akafo S, ALHASSAN M, Asimadu I, Ayyagari R, BAKAYOKO S, BIANGOUP NYAMSI P, Bowden D, Bromley W, Budenz D, Carmichael T, Challa P, Chen Y, Chuka-Okosa C, Costa V, Cruz D, DuBiner H, Ervin J, Feldman R, Flamme-Wiese M, Gaasterland D, Garnai S, Girkin C, GUIROU N, Guo X, Haines J, Hammond C, Herndon L, Hoffmann T, Hulette C, Hydara A, Igo Jr. R, Jorgenson E, KABWE J, KILANGALANGA N, Kizor-Akaraiwe N, Kuchtey R, LAMARI H, Li Z, Liebmann J, Liu Y, Loos R, Melo M, Moroi S, Msosa J, Mullins R, Nadkarni G, NAPO A, Ng M, Nunes H, Obeng-Nyarkoh E, Okeke A, Okeke S, OLANIYI O, Oliveira M, Pasquale L, Perez-Grossmann R, Pericak-Vance M, Qin X, RESNIKOFF S, Richards J, Schimiti R, Sim K, Sponsel W, Svidnicki P, Uche N, van Duijn C, Vasconcellos J, Wiggs J, Zangwill L, Risch N, Milea D, Weinreb R, Ashley-Koch A, Fingert J, Aslan M, Antonelli M, de Asis M, Bauer M, Brophy M, Concato J, Cunningham F, Freedman R, Gaziano M, Gleason T, Harvey P, Huang G, Kelsoe J, Kosten T, Lehner T, Lohr J, Marder S, Miller P, O Leary T, Patterson T, Peduzzi P, Przygodski R, Siever L, Sklar P, Strakowski S, Zhao H, Fanous A, Farwell W, Malhorta A, Mane S, Palacios P, Bigdeli T, Corsey M, Zaluda L, Johnson J, Sueiro M, Cavaliere D, Jeanpaul V, Maffucci A, Mancini L, Deen J, Muldoon G, Whitbourne S, Canive J, Adamson L, Calais L, Fuldauer G, Kushner R, Toney G, Lackey M, Mank A, Mahdavi N, Villarreal G, Muly E, Amin F, Dent M, Wold J, Fischer B, Elliott A, Felix C, Gill G, Parker P, Logan C, McAlpine J, DeLisi L, Reece S, Hammer M, Agbor‐Tabie D, Goodson W, Aslam M, Grainger M, Richtand N, Rybalsky A, Al Jurdi R, Boeckman E, Natividad T, Smith D, Stewart M, Torres S, Zhao Z, Mayeda A, Green A, Hofstetter J, Ngombu S, Scott M, Strasburger A, Sumner J, Paschall G, Mucciarelli J, Owen R, Theus S, Tompkins D, Potkin S, Reist C, Novin M, Khalaghizadeh S, Douyon R, Kumar N, Martinez B, Sponheim S, Bender T, Lucas H, Lyon A, Marggraf M, Sorensen L, Surerus C, Sison C, Amato J, Johnson D, Pagan‐Howard N, Adler L, Alerpin S, Leon T, Mattocks K, Araeva N, Sullivan J, Suppes T, Bratcher K, Drag L, Fischer E, Fujitani L, Gill S, Grimm D, Hoblyn J, Nguyen T, Nikolaev E, Shere L, Relova R, Vicencio A, Yip M, Hurford I, Acheampong S, Carfagno G, Haas G, Appelt C, Brown E, Chakraborty B, Kelly E, Klima G, Steinhauer S, Hurley R, Belle R, Eknoyan D, Johnson K, Lamotte J, Granholm E, Bradshaw K, Holden J, Jones R, Le T, Molina I, Peyton M, Ruiz I, Sally L, Tapp A, Devroy S, Jain V, Kilzieh N, Maus L, Miller K, Pope H, Wood A, Meyer E, Givens P, Hicks P, Justice S, McNair K, Pena J, Tharp D, Davis L, Ban M, Cheatum L, Darr P, Grayson W, Munford J, Whitfield B, Wilson E, Melnikoff S, Schwartz B, Tureson M, D Souza D, Forselius K, Ranganathan M, Rispoli L, Sather M, Colling C, Haakenson C, Kruegar D, Muralidhar S, Ramoni R, Breeling J, Chang K, O Donnell C, Tsao P, Moser J, Brewer J, Warren S, Argyres D, Stevens B, Humphries D, Do N, Shayan S, Nguyen X, Pyarajan S, Cho K, Hauser E, Sun Y, Wilson P, McArdle R, Dellitalia L, Harley J, Whittle J. Performance of Polygenic Risk Scores for Primary Open-Angle Glaucoma in Populations of African Descent. JAMA Ophthalmology 2025, 143: 7-14. PMID: 39541127, PMCID: PMC11565374, DOI: 10.1001/jamaophthalmol.2024.4784.Peer-Reviewed Original ResearchConceptsPrimary open-angle glaucomaEuropean ancestry groupsArea under the receiver operating characteristic curveAfrican descentSouth AfricaOpen-angle glaucomaCross-sectional studyIndividuals of African descentBaseline of ageAfrican ancestryOdds ratioGlaucoma patientsRisk stratificationMillion Veteran ProgramPolygenic risk scoresGenetics of glaucomaRisk scorePatients of African descentEuropean ancestryRisk quintileReceiver operating characteristic curveGhanaiansGhanaPopulations of African descentAmerican individuals
2019
International meta-analysis of PTSD genome-wide association studies identifies sex- and ancestry-specific genetic risk loci
Nievergelt CM, Maihofer AX, Klengel T, Atkinson EG, Chen CY, Choi KW, Coleman JRI, Dalvie S, Duncan LE, Gelernter J, Levey DF, Logue MW, Polimanti R, Provost AC, Ratanatharathorn A, Stein MB, Torres K, Aiello AE, Almli LM, Amstadter AB, Andersen SB, Andreassen OA, Arbisi PA, Ashley-Koch AE, Austin SB, Avdibegovic E, Babić D, Bækvad-Hansen M, Baker DG, Beckham JC, Bierut LJ, Bisson JI, Boks MP, Bolger EA, Børglum AD, Bradley B, Brashear M, Breen G, Bryant RA, Bustamante AC, Bybjerg-Grauholm J, Calabrese JR, Caldas- de- Almeida J, Dale AM, Daly MJ, Daskalakis NP, Deckert J, Delahanty DL, Dennis MF, Disner SG, Domschke K, Dzubur-Kulenovic A, Erbes CR, Evans A, Farrer LA, Feeny NC, Flory JD, Forbes D, Franz CE, Galea S, Garrett ME, Gelaye B, Geuze E, Gillespie C, Uka AG, Gordon SD, Guffanti G, Hammamieh R, Harnal S, Hauser MA, Heath AC, Hemmings SMJ, Hougaard DM, Jakovljevic M, Jett M, Johnson EO, Jones I, Jovanovic T, Qin XJ, Junglen AG, Karstoft KI, Kaufman ML, Kessler RC, Khan A, Kimbrel NA, King AP, Koen N, Kranzler HR, Kremen WS, Lawford BR, Lebois LAM, Lewis CE, Linnstaedt SD, Lori A, Lugonja B, Luykx JJ, Lyons MJ, Maples-Keller J, Marmar C, Martin AR, Martin NG, Maurer D, Mavissakalian MR, McFarlane A, McGlinchey RE, McLaughlin KA, McLean SA, McLeay S, Mehta D, Milberg WP, Miller MW, Morey RA, Morris CP, Mors O, Mortensen PB, Neale BM, Nelson EC, Nordentoft M, Norman SB, O’Donnell M, Orcutt HK, Panizzon MS, Peters ES, Peterson AL, Peverill M, Pietrzak RH, Polusny MA, Rice JP, Ripke S, Risbrough VB, Roberts AL, Rothbaum AO, Rothbaum BO, Roy-Byrne P, Ruggiero K, Rung A, Rutten BPF, Saccone NL, Sanchez SE, Schijven D, Seedat S, Seligowski AV, Seng JS, Sheerin CM, Silove D, Smith AK, Smoller JW, Sponheim SR, Stein DJ, Stevens JS, Sumner JA, Teicher MH, Thompson WK, Trapido E, Uddin M, Ursano RJ, van den Heuvel LL, Van Hooff M, Vermetten E, Vinkers CH, Voisey J, Wang Y, Wang Z, Werge T, Williams MA, Williamson DE, Winternitz S, Wolf C, Wolf EJ, Wolff JD, Yehuda R, Young RM, Young KA, Zhao H, Zoellner LA, Liberzon I, Ressler KJ, Haas M, Koenen KC. International meta-analysis of PTSD genome-wide association studies identifies sex- and ancestry-specific genetic risk loci. Nature Communications 2019, 10: 4558. PMID: 31594949, PMCID: PMC6783435, DOI: 10.1038/s41467-019-12576-w.Peer-Reviewed Original ResearchConceptsGenome-wide association studiesDisease genesAssociation studiesGenome-wide significant lociAfrican-ancestry analysesNon-coding RNAsGenetic risk lociParkinson's disease genesEuropean ancestry populationsNovel genesSignificant lociGenetic variationSpecific lociRisk lociAdditional lociLociAncestry populationsCommon variantsHeritability estimatesGenesGWASRNABiologySNPsPARK2
2005
Response to Dr. Kopke's comments on haplotypes at the OPRM1 locus
Luo X, Gelernter J, Zhao H, Kranzler HR. Response to Dr. Kopke's comments on haplotypes at the OPRM1 locus. American Journal Of Medical Genetics Part B Neuropsychiatric Genetics 2005, 135B: 102-102. PMID: 15806579, DOI: 10.1002/ajmg.b.30060.Peer-Reviewed Original Research
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