2025
Incorporating local ancestry information to predict genetically associated DNA methylation in admixed populations
Cheng Y, Zhou G, Li H, Zhang X, Justice A, Martinez C, Aouizerat B, Xu K, Zhao H. Incorporating local ancestry information to predict genetically associated DNA methylation in admixed populations. Briefings In Bioinformatics 2025, 26: bbaf325. PMID: 40622482, PMCID: PMC12232425, DOI: 10.1093/bib/bbaf325.Peer-Reviewed Original ResearchConceptsMethylome-wide association studiesAdmixed populationsComplex traitsLocal ancestryAssociation studiesDNA methylationAssociated with complex traitsLocal ancestry informationPopulations of European ancestryCpG methylation levelsNon-European populationsMeasurement of methylationAncestry informationCpG sitesMethylation levelsEuropean ancestryEpigenetic underpinningsCpGAncestryTraitsMethylationAmerican populationAfrican American populationDNAPopulation
2024
DNA methylation profiles of cancer-related fatigue associated with markers of inflammation and immunometabolism
Xiao C, Peng G, Conneely K, Zhao H, Felger J, Wommack E, Higgins K, Shin D, Saba N, Bruner D, Miller A. DNA methylation profiles of cancer-related fatigue associated with markers of inflammation and immunometabolism. Molecular Psychiatry 2024, 30: 76-83. PMID: 38977918, DOI: 10.1038/s41380-024-02652-z.Peer-Reviewed Original ResearchGene expressionMethylation lociAssociated with gene expressionHead and neck cancerDNA methylation profilesProtein markersLipid metabolismInvolvement of genesIllumina MethylationEPICDNA methylationRelevant gene expressionEpigenetic modificationsExpression pairsInflammatory markersInflammatory responseLociHead and neck cancer patientsAssociated with inflammatory markersGenesDNAMarkers of inflammationAssociated with fatigueExpressionMethylationPost-radiotherapy
2018
DNA methylation signatures analysis with Illumina Infinitum MethylationEPIC and Infinium Human Methylation 450K BeadChip
Zhang X, Zhang X, Hu Y, Justice A, Li B, Wang Z, Zhao H, Krystal J, Xu K. DNA methylation signatures analysis with Illumina Infinitum MethylationEPIC and Infinium Human Methylation 450K BeadChip. Protocol Exchange 2018 DOI: 10.1038/protex.2018.080.Peer-Reviewed Original Research
2017
DNA methylation signatures analysis with Illumina Infinitum MethylationEPIC and Infinium Human Methylation 450K BeadChip
Zhang X, Zhang X, Hu Y, Justice A, Li B, Wang Z, Zhao H, Krystal J, Xu K. DNA methylation signatures analysis with Illumina Infinitum MethylationEPIC and Infinium Human Methylation 450K BeadChip. Protocol Exchange 2017 DOI: 10.1038/protex.2017.135.Peer-Reviewed Original Research
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