2022
A Case-Crossover Phenome-wide association study (PheWAS) for understanding Post-COVID-19 diagnosis patterns
Haupert S, Shi X, Chen C, Fritsche L, Mukherjee B. A Case-Crossover Phenome-wide association study (PheWAS) for understanding Post-COVID-19 diagnosis patterns. Journal Of Biomedical Informatics 2022, 136: 104237. PMID: 36283580, PMCID: PMC9595430, DOI: 10.1016/j.jbi.2022.104237.Peer-Reviewed Original ResearchConceptsPhenome-wide association studyPost-COVID-19 conditionCOVID-19 survivorsCohort of COVID-19 survivorsAssociation studiesMental health disordersConditional logistic regressionWithin-person confoundingSARS-CoV-2 infectionRobust study designsProportion of COVID-19 survivorsPost-COVID-19Healthcare needsMental healthSARS-CoV-2Circulatory diseasesPhenotype codesHealth disordersSARS-CoV-2 positivityStudy designSARS-CoV-2 positive patientsLogistic regressionPheWASPost-COVID-19 infectionCOVID-19
2021
Exposure to Primary Air Pollutants Generated by Highway Traffic and Daily Mortality Risk in Near-Road Communities: A Case-Crossover Study
Filigrana P, Milando C, Batterman S, Levy J, Mukherjee B, Pedde M, Szpiro A, Adar S. Exposure to Primary Air Pollutants Generated by Highway Traffic and Daily Mortality Risk in Near-Road Communities: A Case-Crossover Study. American Journal Of Epidemiology 2021, 191: 63-74. PMID: 34347034, DOI: 10.1093/aje/kwab215.Peer-Reviewed Original ResearchConceptsNear-road populationsAir pollutionMortality riskExposure to traffic-related air pollutionAverage PM2.5 exposureTraffic-generated air pollutionNear-road communitiesResearch LINE sourceConcentrations of PM2.5Traffic-related air pollutionCase-crossover designPrimary air pollutantsConditional logistic regressionPuget Sound area of Washington StateDaily mortality riskCase-crossoverTime-varying covariatesCerebrovascular mortalityPM2.5 exposurePrimary pollutantsQuantify associationsAerodynamic diameterShorter averaging periodsPM2.5Pollution
2017
Explaining Disparities in Ovarian Cancer Incidence Rates between Women of African and European Ancestry: The Role of Genetic Factors
Mullins M, Mukherjee B, Wu A, Pike M, Pharoah P, Berchuck A, Pearce C. Explaining Disparities in Ovarian Cancer Incidence Rates between Women of African and European Ancestry: The Role of Genetic Factors. Cancer Epidemiology Biomarkers & Prevention 2017, 26: 433-434. DOI: 10.1158/1055-9965.epi-17-0030.Peer-Reviewed Original ResearchGenetic risk scoreOvarian cancer incidence ratesNon-Hispanic White (NHWPopulation attributable risk percentCollaborative Oncological Gene-environment StudyCancer incidence ratesNon-genetic risk factorsIncidence rateAfrican AmericansAssociated with ovarian cancer riskOvarian Cancer Association ConsortiumOophorectomy ratesRisk of ovarian cancerAncestry groupsOvarian cancer riskAttributable risk percentNon-genetic riskGene-environment studiesOvarian cancerSingle nucleotide polymorphismsRisk factorsConditional logistic regressionGRS quintileRisk percentLowest quintile
2016
A splicing variant of TERT identified by GWAS interacts with menopausal estrogen therapy in risk of ovarian cancer
Lee A, Bomkamp A, Bandera E, Jensen A, Ramus S, Goodman M, Rossing M, Modugno F, Moysich K, Chang‐Claude J, Rudolph A, Gentry‐Maharaj A, Terry K, Gayther S, Cramer D, Doherty J, Schildkraut J, Kjaer S, Ness R, Menon U, Berchuck A, Mukherjee B, Roman L, Pharoah P, Chenevix‐Trench G, Olson S, Hogdall E, Wu A, Pike M, Stram D, Pearce C, Consortium F. A splicing variant of TERT identified by GWAS interacts with menopausal estrogen therapy in risk of ovarian cancer. International Journal Of Cancer 2016, 139: 2646-2654. PMID: 27420401, PMCID: PMC5500237, DOI: 10.1002/ijc.30274.Peer-Reviewed Original ResearchMeSH KeywordsAge FactorsAgedAged, 80 and overAllelesAlternative SplicingCase-Control StudiesDisease SusceptibilityEstrogen Replacement TherapyFemaleGene-Environment InteractionGenome-Wide Association StudyGenotypeHumansMenopauseMiddle AgedOdds RatioOvarian NeoplasmsPolymorphism, Single NucleotidePopulation SurveillanceRiskTelomeraseConceptsOvarian Cancer Association ConsortiumEstrogen-alone therapyOvarian cancer riskEndometrioid ovarian cancerOvarian cancerET usersET useT alleleAssociated with ovarian cancer riskCancer riskLong-term ET usersOvarian cancer susceptibility lociRisk of ovarian cancerSusceptibility variantsMenopausal estrogen therapyCancer susceptibility lociSerous ovarian cancerSplice variantsNon-usersCase-control studyConditional logistic regressionGenome-wide association studiesIncreased risk of diseaseEndometrioid histotypeEstrogen therapy
2011
Association of daily asthma emergency department visits and hospital admissions with ambient air pollutants among the pediatric Medicaid population in Detroit: Time-series and time-stratified case-crossover analyses with threshold effects
Li S, Batterman S, Wasilevich E, Wahl R, Wirth J, Su F, Mukherjee B. Association of daily asthma emergency department visits and hospital admissions with ambient air pollutants among the pediatric Medicaid population in Detroit: Time-series and time-stratified case-crossover analyses with threshold effects. Environmental Research 2011, 111: 1137-1147. PMID: 21764049, DOI: 10.1016/j.envres.2011.06.002.Peer-Reviewed Original ResearchConceptsAmbient air pollutionGeneralized additive modelCase-crossover designConditional logistic regressionPediatric Medicaid populationAir pollutionAsthma morbidityAssociated with ambient air pollutionMedicaid populationEffects of air pollutionAsthma emergency department visitsAdditive modelLogistic regressionConditional logistic regression modelsAcute asthma eventsAssociations of SO2Interquartile range increaseCase-crossover analysisEmergency department visitsCase-crossover studyPM2.5 concentrationsPM2.5 thresholdLogistic regression modelsStrong effect sizesPM2.5Asthma exacerbation and proximity of residence to major roads: a population-based matched case-control study among the pediatric Medicaid population in Detroit, Michigan
Li S, Batterman S, Wasilevich E, Elasaad H, Wahl R, Mukherjee B. Asthma exacerbation and proximity of residence to major roads: a population-based matched case-control study among the pediatric Medicaid population in Detroit, Michigan. Environmental Health 2011, 10: 34. PMID: 21513554, PMCID: PMC3224543, DOI: 10.1186/1476-069x-10-34.Peer-Reviewed Original ResearchConceptsConditional logistic regressionPopulation-based matched case-control studyPediatric Medicaid populationCase-control studyMedicaid populationProximity of residenceLogistic regressionConditional logistic regression modelsElevated risk of asthmaRisk of asthmaEmergency department visitsCase-control analysisLogistic regression modelsHigh-risk populationTraffic-related pollutantsAsthma outcomesDepartment visitsAsthma eventsAsthma claimAsthma-related eventsAsthma casesEcological biasOdds ratioInvestigate associationsMethodThis study
2007
Analysis of matched case–control data with multiple ordered disease states: possible choices and comparisons
Mukherjee B, Liu I, Sinha S. Analysis of matched case–control data with multiple ordered disease states: possible choices and comparisons. Statistics In Medicine 2007, 26: 3240-3257. PMID: 17206600, DOI: 10.1002/sim.2790.Peer-Reviewed Original ResearchConceptsConditional logistic regressionStratum-specific nuisance parametersCase-control dataAdjacent-category logit modelCase-control studyOrdered categorical dataConditional-likelihood approachLikelihood-based approachNuisance parametersProportional-odds modelCumulative logitsSimulation studyAnalyse such dataMantel-Haenszel approachCumulative logit modelNatural orderPotential risk factorsStages of cancerReference categoryCategorical dataLogistic regressionOrdinal natureEffect of potential risk factorsLow birthweightRisk factors